*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_14
Map Start: 0.00 cM
Map Stop: 55.00 cM
Features by Type:
79 locus
79 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 79.       of 4 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_14
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
e1m3_10x locus 0.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 e1m3_10x locus 0.00 () Automated name-based View Maps
UMN5101_3B locus 0.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 umn5101_3b locus 2.76 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN5101_3B locus 48.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN5101_3B locus 48.50 () Automated name-based View Maps
AME159 locus 0.00 No other positions
CDO1090E locus 7.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1090E locus 83.90 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 cdo1090e locus 71.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO1090E locus 130.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1090E locus 83.90 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo1090e locus 6.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO1090E locus 130.40 () Automated name-based View Maps
CDO203D locus 7.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO203D locus 83.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO203D locus 83.90 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo203d locus 6.40 () Automated name-based View Maps
CDO57D locus 7.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo57d locus 6.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO57D locus 67.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO57D locus 67.60 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-15 cdo57d locus 74.30 () Automated name-based View Maps
e1m2_7x locus 7.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 e1m2_7x locus 9.17 () Automated name-based View Maps
e5m3_5 locus 7.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 e5m3_5 locus 3.77 () Automated name-based View Maps
opt-0679 locus 7.00 No other positions
opt-11850 locus 7.00 No other positions
opt-16366 locus 7.00 No other positions
opt-17644 locus 7.00 No other positions
opt-2151 locus 7.00 No other positions
opt-4076 locus 7.00 No other positions
opt-4076_c locus 7.00 No other positions
opt-5357 locus 7.00 No other positions
opt-5506 locus 7.00 No other positions
opt-7651 locus 7.00 No other positions
opt-9137 locus 7.00 No other positions
opt-9137_c locus 7.00 No other positions
opt-11595_c locus 12.00 No other positions
CSU43b locus 12.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CSU43b locus 67.60 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 csu43b locus 10.80 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 CSU43b locus 4.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CSU43b locus 67.60 () Automated name-based View Maps
CSU43d locus 12.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CSU43d locus 67.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CSU43d locus 67.60 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 csu43d locus 12.70 () Automated name-based View Maps
e6m6_8x locus 12.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 e6m6_8x locus 12.40 () Automated name-based View Maps
ISU1540 locus 12.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 ISU1540 locus 67.60 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xisu1540 locus 29.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 ISU1540 locus 67.60 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 ISU1540 locus 12.50 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-L ISU1540 locus 38.50 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.