*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_16_23
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_16_23
Map Start: 0 cM
Map Stop: 114 cM
Features by Type:
128 locus
128 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 128.       of 6 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_16_23
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ISU582B locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 ISU582B locus 95.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_21 isu582b locus 7 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 isu582b locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 ISU582B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 ISU582B locus 95.3 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_23 isu582b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_21 isu582b locus 5.7 (cM) Automated name-based View Maps
ACO237DI locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 ACO237DI locus 98.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 ACO237DI locus 98.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 aco237di locus 1.7 () Automated name-based View Maps
ACOR254B locus 0 Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 ACOR254B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 ACOR254B locus 95.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 acor254b locus 1.62 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 ACOR254B locus 95.3 () Automated name-based View Maps
opt-17274 locus 3 No other positions
CDO1508B locus 3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 CDO1508B locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1508B locus 51.7 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-15 cdo1508b locus 107.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1508B locus 51.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 cdo1508b locus 3.28 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 CDO1508B locus 95.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 CDO1508B locus 0 (cM) Automated name-based View Maps
opt-1185 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-1185 locus 0 (cM) Automated name-based View Maps
opt-12925 locus 3 No other positions
opt-13480 locus 3 No other positions
opt-13547 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-13547 locus 5.7 (cM) Automated name-based View Maps
opt-14675 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-14675 locus 0.91 (cM) Automated name-based View Maps
opt-17564 locus 3 No other positions
opt-3413 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-3413 locus 0.87 (cM) Automated name-based View Maps
opt-3804 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-3804 locus 5.27 (cM) Automated name-based View Maps
opt-3804_c locus 3 No other positions
opt-5738 locus 3 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-5738 locus 1.12 (cM) Automated name-based View Maps
opt-9107 locus 3 No other positions
opt-5738_c locus 5 No other positions
CDO1402B locus 7 Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 cdo1402b locus 4.04 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO16_23 cdo1402b locus 4 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 CDO1402B locus 95.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 CDO1402B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 CDO1402B locus 95.3 () Automated name-based View Maps
opt-16084 locus 18 No other positions
opt-16130 locus 18 No other positions
opt-17966 locus 18 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-17966 locus 2.95 (cM) Automated name-based View Maps
opt-2798 locus 18 No other positions
opt-4643 locus 18 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_26 oPt-4643 locus 1.95 (cM) Automated name-based View Maps
opt-7690 locus 18 No other positions
opt-16130_c locus 19 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.