*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_1_3_38_X1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_1_3_38_X1
Map Start: 0 cM
Map Stop: 62 cM
Features by Type:
42 locus
42 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 42.       of 2 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BCD1660 locus 0 Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 BCD1660 locus 140.71 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 BCD1660 locus 36.5 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 bcd1660 locus 92 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xbcd1660 locus 59.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 BCD1660 locus 36.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD1660 locus 102.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 bcd1660 locus 92.2 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_1_3_38X1 bcd1660 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 bcd1660 locus 103 (cM) Automated name-based View Maps
CDO278 locus 0 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_20 cdo278 locus 42 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 CDO278 locus 118.28 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_20 cdo278 locus 37.1 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO278 locus 102.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 CDO278 locus 32.6 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xcdo278 locus 51.3 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_20 cdo278 locus 37.1 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo278 locus 34.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 CDO278 locus 32.6 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo278 locus 91.5 () Automated name-based View Maps
BCD1735 locus 0 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-11 bcd1735 locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD1735 locus 102.5 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xbcd1735 locus 58.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 BCD1735 locus 36.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 bcd1735 locus 90.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 BCD1735 locus 36.5 () Automated name-based View Maps
BCD1823A locus 0 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 bcd1823a locus 9 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 BCD1823A locus 90.3 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-11 bcd1823a locus 5.6 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 bcd1823a locus 106 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 BCD1823A locus 90.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD1823A locus 91.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 BCD1823A locus 58.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 BCD1823A locus 58.8 () Automated name-based View Maps
CDO1403A locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 CDO1403A locus 56.7 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO1403A locus 96.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 CDO1403A locus 56.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo1403a locus 95.7 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 CDO1403A locus 149.52 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO1403A locus 96.25 (cM) Automated name-based View Maps
ACOR372 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 ACOR372 locus 35.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 acor372 locus 89.6 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xacor372 locus 62.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 ACOR372 locus 102.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 ACOR372 locus 102.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 ACOR372 locus 35.9 () Automated name-based View Maps
e8m8_8x locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 e8m8_8x locus 89.6 () Automated name-based View Maps
re1m3_19x locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 re1m3_19x locus 89.2 () Automated name-based View Maps
re1m6_5x locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 re1m6_5x locus 89.4 () Automated name-based View Maps
UMN5560C locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 UMN5560C locus 43.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 UMN5560C locus 43.8 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 umn5560c locus 90.4 () Automated name-based View Maps
UMN5895A locus 0 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 UMN5895A locus 107.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 UMN5895A locus 107.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 umn5895a locus 89.9 () Automated name-based View Maps
opt-2065 locus 0 No other positions
ubc372s locus 0 No other positions
U8PM20 locus 0 Oat - Oat-2010-U8xPc68 - Oat-2010-U8xP_9 U8PM20 locus 16.14 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 U8PM20 locus 49.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 U8PM20 locus 49.3 () Automated name-based View Maps
cnl81 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 cnl81 locus 35.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 cnl81 locus 35.9 () Automated name-based View Maps
CDO1527A locus 8 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 CDO1527A locus 25.3 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_1_3_38X1 cdo1527a locus 8 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 cdo1527a locus 100 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 CDO1527A locus 25.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo1527a locus 99.8 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 cdo1527a locus 111 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO1527A locus 96.25 (cM) Automated name-based View Maps
BCD1443A locus 8 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 BCD1443A locus 25.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 bcd1443a locus 9 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 bcd1443a locus 96.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 BCD1443A locus 25.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD1443A locus 96.25 (cM) Automated name-based View Maps
ISU2064A locus 8 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 ISU2064A locus 91.25 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 ISU2064A locus 58.8 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 isu2064a locus 107 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 ISU2064A locus 58.8 () Automated name-based View Maps
Wacgcac667 locus 8 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Wacgcac667 locus 96.25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 Wacgcac667 locus 95.6 () Automated name-based View Maps
AME107 locus 8 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 AME107 locus 43.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 AME107 locus 43.8 () Automated name-based View Maps
opt-11327 locus 12 Oat - Oat-2010-SolxHi - Oat-2010-SolxHi_1 oPt-11327 locus 58 (cM) Automated name-based View Maps
ACO226B locus 12 Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 aco226b locus 120 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 aco226b locus 109 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 ACO226B locus 61.6 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 ACO226B locus 91.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 ACO226B locus 61.6 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 aco226b locus 109 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 ACO226B locus 91.25 (cM) Automated name-based View Maps
e5m7_3a locus 12 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 e5m7_3a locus 106 () Automated name-based View Maps
re6m6_7x locus 12 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 re6m6_7x locus 106 () Automated name-based View Maps
opt-12915 locus 12 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.