*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_1_3_38_X3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_1_3_38_X3
Map Start: 0 cM
Map Stop: 67 cM
Features by Type:
30 locus
30 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 30.       of 2 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
opt-15764 locus 0 No other positions
CDO393C locus 4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO393C locus 0 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO1 cdo393c locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO393C locus 0 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_1_3_38X3 cdo393c locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 cdo393c locus 0 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_UL.8 cdo393c locus 0 (cM) Automated name-based View Maps
opt-9363 locus 4 No other positions
opt-16798 locus 5 Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_1_3_38X3 opt-16798 locus 1 (cM) Automated name-based View Maps
opt-14468 locus 5 No other positions
opt-3986 locus 5 No other positions
opt-4883 locus 5 No other positions
opt-3986_c locus 9 No other positions
CDO346B locus 20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO1 cdo346b locus 15 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 CDO346b locus 14.7 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-6 CDO346b locus 179.35 () Automated name-based View Maps
BCD1261A locus 20 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 bcd1261a locus 64 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 bcd1261a locus 64 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 bcd1261a locus 64 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 BCD1261A locus 116.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 bcd1261a locus 10.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 bcd1261a locus 64 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 bcd1261a locus 64 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 bcd1261a locus 64 (cM) Automated name-based View Maps
ACO221A locus 20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 ACO221A locus 116.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 aco221a locus 19 () Automated name-based View Maps
Mdhs locus 20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 Mdhs locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 Mdhs locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_23 Mdhs locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 Mdhs locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 Mdhs locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 Mdhs locus 116.2 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-3 mdhs locus 60.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 Mdhs locus 116.2 () Automated name-based View Maps
opt-5671 locus 25 No other positions
Wacgcac89 locus 25 Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 Wacgcac89 locus 18.8 () Automated name-based View Maps
opt-0521 locus 25 No other positions
opt-16530 locus 25 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_35 oPt-16530 locus 3.19 (cM) Automated name-based View Maps
opt-16737 locus 25 No other positions
opt-17280 locus 25 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_35 oPt-17280 locus 3.19 (cM) Automated name-based View Maps
opt-16530_c locus 33 No other positions
Waagcac166 locus 33 Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 Waagcac166 locus 23.6 () Automated name-based View Maps
Wacgcac123 locus 33 Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 Wacgcac123 locus 24.4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO1 wacgcac123 locus 24 (cM) Automated name-based View Maps
opt-5044 locus 33 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_35 oPt-5044 locus 0 (cM) Automated name-based View Maps
opt-17385 locus 43 No other positions
opt-18011 locus 43 No other positions
opt-13202 locus 45 Oat - Oat-2010-SolxHi - Oat-2010-SolxHi_1 oPt-13202 locus 9.5 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.