*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_36
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_36
Map Start: 0 cM
Map Stop: 32 cM
Features by Type:
35 locus
35 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 35.       of 2 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_36
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
opt-1813 locus 0 No other positions
re1m2_1ax locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 re1m2_1ax locus 2.81 () Automated name-based View Maps
CDO1380 locus 3 Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_7 cdo1380 locus 39 (cM) Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H CDO1380a locus 173.42 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO1380 locus 42.7 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 CDO1380 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 cdo1380 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO1380 locus 42.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_10 cdo1380 locus 39 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_3 cdo1380 locus 45.6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_3 cdo1380 locus 39 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_3 cdo1380 locus 39 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo1380 locus 81.1 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO36 cdo1380 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_17 cdo1380 locus 39 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 CDO1380 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_24 cdo1380 locus 39 (cM) Automated name-based View Maps
BCD1716A locus 9 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 bcd1716a locus 8.56 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 BCD1716A locus 16.02 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 BCD1716A locus 25.6 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 BCD1716A locus 9 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO36 bcd1716a locus 9 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 BCD1716A locus 25.6 () Automated name-based View Maps
ACO245A locus 9 Oat - Oat-2004-TxM - Oat-2004-TxM_25 aco245a locus 2 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-TM_25 aco245a locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 aco245a locus 9.64 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 ACO245A locus 25.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 ACO245A locus 25.2 () Automated name-based View Maps
e6m6_8 locus 9 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 e6m6_8 locus 9 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 e6m6_8 locus 10.3 () Automated name-based View Maps
UMN23 locus 9 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-26 umn23 locus 0 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_26 umn23 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN26 umn23 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 UMN23 locus 32.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 UMN23 locus 32.3 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 UMN23 locus 20.29 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-36 Xumn23 locus 19 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 umn23 locus 10.2 () Automated name-based View Maps
CDO1321A locus 14 Oat - Oat-2013-KxO-RGA - RGA-2013_KO36 cdo1321a locus 13 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 CDO1321A locus 29.9 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 CDO1321A locus 13 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 cdo1321a locus 13.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO1321A locus 32.7 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-TM_25 cdo1321a locus 31 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_25 cdo1321a locus 15 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO1321A locus 32.7 () Automated name-based View Maps
re5m3_3 locus 14 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 re5m3_3 locus 15.1 () Automated name-based View Maps
CDO534DI locus 18 Oat - Oat-2013-KxO-RGA - RGA-2013_KO36 cdo534di locus 18 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO534DI locus 36.9 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 CDO534DI locus 16 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 CDO534DI locus 9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO534DI locus 36.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 cdo534di locus 17.6 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_36 cdo534di locus 0 (cM) Automated name-based View Maps
BCD1882B locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 bcd1882b locus 16.2 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 BCD1882B locus 15.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 BCD1882B locus 32.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 BCD1882B locus 32.8 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 BCD1882B locus 55.8 (cM) Automated name-based View Maps
e1m6_23x locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 e1m6_23x locus 18.2 () Automated name-based View Maps
e6m4_1a locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 e6m4_1a locus 18.9 () Automated name-based View Maps
re2m3_3x locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 re2m3_3x locus 18 () Automated name-based View Maps
re6m4_2 locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 re6m4_2 locus 19 () Automated name-based View Maps
re6m5_3a locus 18 Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 re6m5_3a locus 19.8 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 re6m5_3a locus 18 (cM) Automated name-based View Maps
UMN498A locus 18 Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_36 UMN498A locus 45.66 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 UMN498A locus 9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 umn498a locus 16.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 UMN498A locus 36.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 UMN498A locus 36.9 () Automated name-based View Maps
opt-0988 locus 18 No other positions
opt-0988_c locus 18 No other positions
opt-17948 locus 18 No other positions
opt-17948_c locus 18 No other positions
opt-4119 locus 18 No other positions
opt-4995 locus 18 No other positions
opt-1097 locus 20 Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_36 opt-1097 locus 2 (cM) Automated name-based View Maps
Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_22 oPt-1097 locus 6.69 (cM) Automated name-based View Maps
BCD1407 locus 20 Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 bcd1407 locus 22.2 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 BCD1407 locus 25.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 BCD1407 locus 25.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 bcd1407 locus 21 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6B bcd1407 locus 13.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A bcd1407 locus 37.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-36 bcd1407 locus 5.96 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-36 Xbcd1407 locus 12.5 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_36 bcd1407 locus 12.5 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.