*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2009-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2009-KxO_7_10_28
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2009-KxO [ View Map Set Info ]
Map Name: Oat-2009-KxO_7_10_28
Map Start: 0 cM
Map Stop: 172 cM
Features by Type:
178 locus
178 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 178.       of 8 | Next
Oat - Oat-2009-KxO - Oat-2009-KxO_7_10_28
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
re1m6_22x locus 0 Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 re1m6_22x locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 re1m6_22x locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 re1m6_22x locus 0 () Automated name-based View Maps
e1m2_9x locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 e1m2_9x locus 5.33 () Automated name-based View Maps
e4m6_9x locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 e4m6_9x locus 5.24 () Automated name-based View Maps
UMN409 locus 0 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_27 umn409 locus 89 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 umn409 locus 89 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 umn409 locus 89 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-10 Xumn409 locus 0 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 umn409 locus 11.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 UMN409 locus 32.3 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_20 umn409 locus 89 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 UMN409 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 UMN409 locus 32.3 () Automated name-based View Maps
Oat - Oat-2001-KxM - Oat-2001-KxM_10 umn409 locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 UMN409 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_20 umn409 locus 89 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 umn409 locus 89 (cM) Automated name-based View Maps
BCD1856 locus 9 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 bcd1856 locus 9.33 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_17 bcd1856 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 BCD1856 locus 32.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xbcd1856 locus 59.9 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 bcd1856 locus 9 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 BCD1856 locus 5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 BCD1856 locus 32.3 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 BCD1856 locus 5 (cM) Automated name-based View Maps
e8m1_5x locus 9 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 e8m1_5x locus 13.3 () Automated name-based View Maps
CDO1388 locus 16 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 CDO1388 locus 41.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 CDO1388 locus 41.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 CDO1388 locus 11.25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 CDO1388 locus 11.25 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 cdo1388 locus 16 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-10 Xcdo1388 locus 12.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 cdo1388 locus 16.3 () Automated name-based View Maps
CDO1461B locus 16 No other positions
BCD1950A locus 16 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 bcd1950a locus 17.6 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_17 bcd1950a locus 26 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 BCD1950A locus 15 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 BCD1950A locus 41.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 BCD1950A locus 41.3 () Automated name-based View Maps
CDO1328 locus 16 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_18 cdo1328 locus 25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 CDO1328 locus 11.25 (cM) Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_3 cdo1328 locus 7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 CDO1328 locus 41.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 CDO1328 locus 41.3 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-4 CDO1328 locus -3 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H CDO1328 locus 71 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_18 cdo1328 locus 25.1 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 CDO1328 locus 17.4 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo1328 locus 53 () Automated name-based View Maps
opt-4891 locus 16 No other positions
ACO142B locus 20 Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 aco142b locus 21 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 ACO142B locus 43.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 ACO142B locus 43.7 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 ACO142B locus 15 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 aco142b locus 20.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 ACO142B locus 15 (cM) Automated name-based View Maps
ISU1450 locus 25 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 ISU1450 locus 45.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-F ISU1450 locus 98.3 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-10 Xisu1450 locus 27.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 ISU1450 locus 21.25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 ISU1450 locus 27.8 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 ISU1450 locus 21.25 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 isu1450 locus 28 (cM) Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswH isu1450 locus 66 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 ISU1450 locus 45.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_18 isu1450 locus 23 (cM) Automated name-based View Maps
CDO1461 locus 41 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 cdo1461 locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 cdo1461 locus 44.4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 cdo1461 locus 44 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 cdo1461 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 cdo1461 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_7-10-28 CDO1461 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 CDO1461 locus 50 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 cdo1461 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 CDO1461 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_7_10_28 cdo1461 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-7 Xcdo1461 locus -1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 CDO1461 locus 50 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 cdo1461 locus 44 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 cdo1461 locus 19 (cM) Automated name-based View Maps
U71PM15 locus 41 Oat - Oat-2006-U71xP - Oat-2006-U71xP_3 u71pm15 locus 54 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 U71PM15 locus 61.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 U71PM15 locus 61.6 () Automated name-based View Maps
UMN509A locus 47 Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_7_10_28 umn509a locus 6 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 UMN509A locus 62.1 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 umn509a locus 50 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 umn509a locus 48.59 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 UMN509A locus 62.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 umn509a locus 50.1 () Automated name-based View Maps
UMN5271_2B locus 51 Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 UMN5271_2B locus 35 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 umn5271_2b locus 52.24 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO7_10_28 umn5271_2b locus 55 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 UMN5271_2B locus 64.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 umn5271_2b locus 55.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 UMN5271_2B locus 64.5 () Automated name-based View Maps
e5m5_10b locus 51 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 e5m5_10b locus 53.2 () Automated name-based View Maps
e8m3_1b locus 51 Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 e8m3_1b locus 52.6 () Automated name-based View Maps
opt-14277 locus 51 Oat - Oat-2012-Dal_x_Exeter - Oat-2012-DxE_19 oPt-14277 locus 23.61 (cM) Automated name-based View Maps
opt-1551 locus 51 No other positions
opt-17671 locus 51 No other positions
opt-17672 locus 51 No other positions
opt-4047 locus 51 No other positions
opt-4047_c locus 51 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.