*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RGA-2013_KO11_41_20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO11_41_20
Map Start: 0.00 cM
Map Stop: 74.00 cM
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2013-KxO-RGA - RGA-2013_KO11_41_20
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
umn5960 locus 52.00 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN17 umn5960 locus 53.60 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 UMN5960 locus 32.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 UMN5960 locus 92.50 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-17 umn5960 locus 62.30 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 UMN5960 locus 56.00 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_17 umn5960 locus 53.60 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 umn5960 locus 51.90 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 umn5960 locus 60.12 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 UMN5960 locus 92.50 () Automated name-based View Maps
og19 locus 43.00 Oat - Oat-2001-KxO - Oat-2001-KxO_11-41 OG19 locus 25.00 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 OG19 locus 42.00 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xog19 locus 40.60 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 og19 locus 55.41 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 og19 locus 42.70 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 OG19 locus 54.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 OG19 locus 100.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 OG19 locus 100.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 OG19 locus 102.80 () Automated name-based View Maps
cdo836arv locus 30.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 cdo836arv locus 30.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO836ARV locus 116.90 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 cdo836arv locus 41.18 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 CDO836ARV locus 57.00 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 CDO836ARV locus 40.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO836ARV locus 116.90 () Automated name-based View Maps
cdo1464 locus 17.00 Oat - Oat-2001-KxO - Oat-2001-KxO_11-41 CDO1464 locus 12.50 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO1464 locus 114.70 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_7 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 cdo1464 locus 24.59 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_3 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_24 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_3 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_17 cdo1464 locus 82.10 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 CDO1464 locus 80.00 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 CDO1464 locus 22.00 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_10 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 cdo1464 locus 16.80 () Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN17 cdo1464 locus 82.10 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_17 cdo1464 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-17 cdo1464 locus 89.70 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_22 CDO1464 locus 20.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO1464 locus 114.70 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-11 Xcdo1464 locus 0.00 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_3 cdo1464 locus 16.60 (cM) Automated name-based View Maps
9f locus 10.00 No other positions
AluI/PK3Fb_1 locus 10.00 No other positions
cdo1436c locus 10.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO1436C locus 123.20 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 cdo1436c locus 19.88 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_11-41 CDO1436C locus 7.50 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 CDO1436C locus 19.00 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 CDO1436C locus 86.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 cdo1436c locus 10.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO1436C locus 123.20 () Automated name-based View Maps
S3S1.24a locus 6.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 S3S1.24a locus 147.60 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 S3S1.24a locus 15.18 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 S3S1.24a locus 147.60 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 S3S1.24a locus 8.00 (cM) Automated name-based View Maps
umn5112_2 locus 6.00 Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 UMN5112_2 locus 101.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 UMN5112_2 locus 130.90 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_11-41 UMN5112_2 locus 3.75 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 umn5112_2 locus 10.35 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 UMN5112_2 locus 14.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 UMN5112_2 locus 130.90 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 umn5112_2 locus 6.17 () Automated name-based View Maps
umn5254_2a locus 0.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 umn5254_2a locus 0.00 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 UMN5254_2A locus 93.00 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_2 umn5254_2a locus 16.00 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 UMN5254_2A locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 umn5254_2a locus 0.00 (cM) Automated name-based View Maps
re6m4_21x locus 74.00 Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 re6m4_21x locus 74.20 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 re6m4_21x locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 re6m4_21x locus 80.00 (cM) Automated name-based View Maps
RsaI/NBS6_4 locus 66.00 No other positions
isu1543a locus 66.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 ISU1543A locus 68.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 ISU1543A locus 68.10 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 isu1543a locus 66.00 () Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 ISU1543A locus 16.00 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 isu1543a locus 88.59 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 ISU1543A locus 70.00 (cM) Automated name-based View Maps
S5S1.1.6 locus 61.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 S5S1.1.6 locus 62.20 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 S5S1.1.6 locus 73.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 S5S1.1.6 locus 62.20 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 S5S1.1.6 locus 78.94 (cM) Automated name-based View Maps
RsaI/PK3Fa_6 locus 61.00 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN9 RsaI/PK3Fa_6 locus 47.00 (cM) Automated name-based View Maps
cdo1090c locus 61.00 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO11_41+20 cdo1090c locus 76.59 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 CDO1090C locus 67.00 (cM) Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_11_40_20_45 cdo1090c locus 0.00 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 cdo1090c locus 65.30 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 cdo1090c locus 61.00 (cM) Automated name-based View Maps
Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_11 CDO1090C locus 21.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO1090C locus 130.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO1090C locus 91.20 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 CDO1090C locus 70.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO1090C locus 130.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 CDO1090C locus 84.20 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 cdo1090c locus 61.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO1090C locus 91.20 () Automated name-based View Maps
S-9202a locus 52.00 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.