*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RGA-2013_KO22_44_18
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO22_44_18
Map Start: 0 cM
Map Stop: 186 cM
Features by Type:
38 locus
38 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 38.       of 2 | Next
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
umn5485 locus 156 Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN5485 locus 15 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN5485 locus 146 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 umn5485 locus 46.12 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn5485 locus 156 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN5485 locus 36.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN5485 locus 36.9 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 UMN5485 locus 51.6 () Automated name-based View Maps
113b locus 152 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF 113b locus 183 (cM) Automated name-based View Maps
cdo795b locus 152 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO795B locus 86.4 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-31 cdo795b locus 61 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 cdo795b locus 48.35 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 cdo795b locus 59 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO795B locus 48.06 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO795B locus 144 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO795B locus 86.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO795B locus 18.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo795b locus 152 () Automated name-based View Maps
umn857 locus 141 Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN857 locus 143 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN857 locus 67.7 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xumn857 locus 31.6 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn857 locus 141 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN857 locus 67.7 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN857 locus 32.5 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 umn857 locus 60.24 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 UMN857 locus 95.8 () Automated name-based View Maps
umn589b locus 134 Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN589B locus 128 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN589B locus 75.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN589B locus 37.5 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 UMN589B locus 102.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN589B locus 75.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn589b locus 134 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 umn589b locus 64 (cM) Automated name-based View Maps
cdo608drv locus 131 Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO608DRV locus 117.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO608DRV locus 87.5 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 cdo608drv locus 65.29 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo608drv locus 131 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO608DRV locus 87.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO608DRV locus 133 (cM) Automated name-based View Maps
aco168a locus 127 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 aco168a locus 68.82 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 ACO168A locus 47.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ACO168A locus 94.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 ACO168A locus 130.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 aco168a locus 127 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ACO168A locus 94.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 ACO168A locus 128 (cM) Automated name-based View Maps
cdo1471 locus 116 Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg20 CDO1471 locus 119.6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xcdo1471 locus 54.5 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_21 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_28 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1471 locus 119.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_28 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO1471 locus 114 (cM) Automated name-based View Maps
Oat - Oat-2004-P39xP48 - Oat-2004-P39xP48_2 cdo1471 locus 7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 cdo1471 locus 52 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO1471 locus 165.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO1471 locus 57.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1471 locus 119.7 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO1471 locus 107.07 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo1471 locus 116 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 cdo1471 locus 72.35 (cM) Automated name-based View Maps
cdo708b locus 112 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO708B locus 127.4 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-4 cdo708b locus 62.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO708B locus 173.6 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo708b locus 112 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO708B locus 127.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO708B locus 119 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO708B locus 114.54 (cM) Automated name-based View Maps
97a locus 108 No other positions
RsaI/PK4R1a_14 locus 108 No other positions
isu1961crv locus 108 Oat - Oat-2016-KxO - Oat-2016-KxO_1 ISU1961CRV locus 181.3 () Automated name-based View Maps
Oat - Oat-2004-P39xP48 - Oat-2004-P39xP48_2 isu1961crv locus 8 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 isu1961crv locus 108 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1961CRV locus 135.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1961CRV locus 135.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 ISU1961CRV locus 114 (cM) Automated name-based View Maps
cdo419 locus 98 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo419 locus 97.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H cdo419 locus 203.11 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 cdo419 locus 72 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO419 locus 156.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO419 locus 198 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C CDO0419 locus 109.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO419 locus 75 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO419 locus 94 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO419 locus 156.7 () Automated name-based View Maps
RsaI/PK1Fa_6 locus 93 No other positions
RsaI/PK1Fa_4 locus 93 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN22 RsaI/PK1Fa_4 locus 0.8 (cM) Automated name-based View Maps
cdo484a locus 93 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO484A locus 161 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo484a locus 93.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO484A locus 78.75 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO484A locus 161 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO484A locus 204.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO484A locus 94 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_18 cdo484a locus 17 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO484A locus 156.73 (cM) Automated name-based View Maps
cdo770b locus 88 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo770b locus 88.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO770B locus 173.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO770B locus 78.75 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO770B locus 173.02 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO770B locus 173.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO770B locus 89 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO770B locus 220.4 () Automated name-based View Maps
bcd180 locus 76 Oat - Oat-2001-KxO - Oat-2001-KxO_22 BCD180 locus 92 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 BCD180 locus 76 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 bcd180 locus 76.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD180 locus 196.3 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xbcd180 locus 97.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD180 locus 196.3 () Automated name-based View Maps
RsaI/PK3Fb_8 locus 70 No other positions
umn5004 locus 70 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn5004 locus 69.9 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 UMN5004 locus 257.8 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xumn5004 locus 108.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN5004 locus 196.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN5004 locus 196.3 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN5004 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN5004 locus 92 (cM) Automated name-based View Maps
RN182c locus 64 No other positions
SgSATII3 locus 64 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswG SgSatII3 locus 10 (cM) Automated name-based View Maps
isu1507 locus 64 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 ISU1507 locus 64.2 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswI isu1507 locus 4 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 ISU1507 locus 67 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1507 locus 202.6 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C ISU1507 locus 320.4 () Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_30 isu1507xp locus 13 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1507 locus 202.6 () Automated name-based View Maps
RsaI/PK1Fb_2 locus 33 No other positions
cdo482b locus 33 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO482B locus 241 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 CDO482B locus 33.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO482B locus 2 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO482B locus 241 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.