*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RGA-2013_KO24_26_34
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO24_26_34
Map Start: 0 cM
Map Stop: 141 cM
Features by Type:
33 locus
33 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 33.       of 2 | Next
Oat - Oat-2013-KxO-RGA - RGA-2013_KO24_26_34
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
isu1651 locus 141 Diploid oat - Diploid Oat, AFLP - Avena-Yu-D Xisu1651 locus 320.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 ISU1651 locus 141 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1651 locus 14.7 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 isu1651 locus 9.41 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1651 locus 14.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 ISU1651 locus 83 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 ISU1651 locus 15 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-D ISU1651 locus 308.7 () Automated name-based View Maps
II2.17 locus 139 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 II2.17 locus 14.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 II2.17 locus 83 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 II2.17 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 II2.17 locus 14.7 () Automated name-based View Maps
AluI/PK4R1b_7 locus 132 No other positions
RsaI/NBS5A_6 locus 132 No other positions
bcd961 locus 132 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD961 locus 14.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD961 locus 93 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_30 BCD961 locus 2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD961 locus 18.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 bcd961 locus 132 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD961 locus 14.7 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 bcd961 locus 15.53 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd961 locus 10.4 () Automated name-based View Maps
L7M4.9b locus 122 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 L7M4.9b locus 14.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_30 L7M4.9b locus 7.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 L7M4.9b locus 83 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 L7M4.9b locus 17.88 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 L7M4.9b locus 14.7 () Automated name-based View Maps
HaeIII/NBS6_4 locus 122 No other positions
cdo373 locus 122 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO373 locus 14.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 CDO373 locus 122 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO373 locus 14.7 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H CDO373 locus 124.06 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-2H CDO373 locus 124.06 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H CDO373 locus 126.6 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H CDO373 locus 140.1 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO373 locus 74 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 cdo373 locus 26.12 (cM) Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-2H CDO373 locus 118.53 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H CDO373 locus 210.39 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H CDO373 locus 48.6 () Automated name-based View Maps
Wheat ABD - 2DL, Augusta x Geneva - Ta-Augusta/Geneva-2D Xcdo373-2D locus 27.9 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H CDO373 locus 124.05 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H CDO373 locus 121.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H CDO373 locus 118.53 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H CDO373 locus 175.19 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-2H CDO373 locus 124.5 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-2 CDO373 locus 124.06 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_12 cdo373 locus 50 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO373 locus 0 (cM) Automated name-based View Maps
wacacaa378 locus 115 Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 Wacacaa378 locus 74 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 Wacacaa378 locus 32.35 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 Wacacaa378 locus 115 () Automated name-based View Maps
AluI/PK4R1b_3 locus 104 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN22 AluI/PK4R1b_3 locus 64.6 (cM) Automated name-based View Maps
HaeIII/PK4R1b_4 locus 104 No other positions
re2m2_12x locus 104 Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 re2m2_12x locus 104 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 re2m2_12x locus 70 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 re2m2_12x locus 40.47 (cM) Automated name-based View Maps
cdo353a locus 90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO353A locus 51.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO353A locus 51.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo353a locus 90.2 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 cdo353a locus 48.71 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO353A locus 47.5 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO353A locus 68 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 CDO353A locus 22.9 () Automated name-based View Maps
aco139rv locus 87 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 aco139rv locus 51.18 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ACO139RV locus 53.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 ACO139RV locus 25.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 ACO139RV locus 68 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 aco139rv locus 86.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ACO139RV locus 53.5 () Automated name-based View Maps
HaeIII/PK1Fa_2 locus 75 No other positions
cdo795a locus 75 Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO795A locus 57.5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 cdo795a locus 7.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo795a locus 75.2 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo795a locus 8 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 CDO795A locus 40.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO795A locus 78.1 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 cdo795a locus 61.53 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO795A locus 61 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO795A locus 78.1 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 CDO795A locus 88.11 (cM) Automated name-based View Maps
cdo590a locus 70 Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo590a locus 70.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 CDO590A locus 50.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO590A locus 61.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO590A locus 84.9 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO590A locus 57 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 CDO590A locus 78.5 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo590a locus 15.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO590A locus 84.9 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 cdo590a locus 15.2 () Automated name-based View Maps
umn624 locus 58 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN3 umn624 locus 72.3 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN624 locus 103.6 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 UMN624 locus 71.8 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_UL.2 umn624 locus 0 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-3 umn624 locus 49.1 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 UMN624 locus 41 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN624 locus 103.6 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN3 umn624 locus 48.9 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 umn624 locus 57.6 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_3 umn624 locus 72.3 (cM) Automated name-based View Maps
bcd808b locus 53 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_28 bcd808b locus 53 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_21 bcd808b locus 53 (cM) Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-4 bcd808b locus 40.05 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_7 bcd808b locus 55.6 (cM) Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-4H bcd808b locus 40.05 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-4H bcd808b locus 14 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 bcd808b locus 53 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_28 bcd808b locus 53 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 BCD808B locus 113.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H bcd808b locus 139 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bcd808b locus 55.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 BCD808B locus 113.2 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-4H bcd808b locus 41.67 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD808B locus 76.25 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 bcd808b locus 53 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_7 bcd808b locus 55.6 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-10 bcd808b locus 16.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 bcd808b locus 52.9 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD808B locus 41 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_10 bcd808b locus 16 (cM) Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-4H bcd808b locus 41.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 BCD808B locus 82.2 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_7 bcd808b locus 55.6 (cM) Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H bcd808b locus 52.11 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-4H bcd808b locus 38.8 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-4H bcd808b locus 40.05 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 bcd808b locus 53 (cM) Automated name-based View Maps
AluI/PK3Fb_5 locus 43 No other positions
umn220 locus 43 Oat - Oat, KxO - Oat-KxO-24 Xumn220 locus 59.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 UMN220 locus 91.25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 umn220 locus 43.4 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_24 umn220 locus 59.8 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 UMN220 locus 36 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN220 locus 125.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN220 locus 125.8 () Automated name-based View Maps
AluI/NBS1_7 locus 40 No other positions
bcd1968b locus 40 Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD1968B locus 91.25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 bcd1968b locus 40.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 BCD1968B locus 98.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD1968B locus 36 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 BCD1968B locus 125.8 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_24 bcd1968b locus 57.5 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 BCD1968B locus 24.03 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 BCD1968B locus 125.8 () Automated name-based View Maps
HaeIII/PK4R1a_2 locus 24 No other positions
bglucanase locus 24 Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 Bglucanase locus 23.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 Bglucanase locus 164.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 Bglucanase locus 20 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 Bglucanase locus 164.7 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Bglucanase locus 106.25 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.