*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-MxN-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-MxN-RGA_MN12
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-MxN-RGA [ View Map Set Info ]
Map Name: Oat-2013-MxN-RGA_MN12
Map Start: 0 cM
Map Stop: 53.3 cM
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cdo665 locus 0 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-2H CDO665 locus 125.1 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 cdo665 locus 0 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H CDO665 locus 24.9 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-2H CDO665 locus 53.3 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 CDO665 locus 0 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 CDO665 locus 0 (cM) Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H CDO665 locus 161.31 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H CDO665B locus 108.8 () Automated name-based View Maps
cdo1430 locus 8 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 cdo1430 locus 9.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 CDO1430 locus 40.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1430 locus 51 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo1430 locus 32.8 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 cdo1430 locus 8 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1430 locus 51 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xcdo1430 locus 9.9 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO1430 locus 33 (cM) Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 cdo1430 locus 8.9 (cM) Automated name-based View Maps
bcd1842 locus 8.8 Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 bcd1842 locus 10.2 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xbcd1842C locus 7.9 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 bcd1842 locus 11 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 bcd1842 locus 8.8 (cM) Automated name-based View Maps
bcd1270 locus 10.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 BCD1270 locus 126.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 BCD1270 locus 126.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 bcd1270 locus 7.23 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 bcd1270 locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_11-41 BCD1270 locus 0 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_11 bcd1270 locus 17.3 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 BCD1270 locus 8 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 bcd1270 locus 10.4 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-11 Xbcd1270 locus 17.3 () Automated name-based View Maps
cdo942 locus 14.2 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 cdo942 locus 11 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 CDO942 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 CDO942 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 cdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-19+27 cdo942 locus 24.3 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 cdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_19_25_27 CDO942 locus 12 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 cdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 cdo942 locus 14.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo942 locus 6 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo942 locus 116.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 cdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo942 locus 6 (cM) Automated name-based View Maps
bcd1729 locus 16.6 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 bcd1729 locus 13.5 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 bcd1729 locus 31 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD1729 locus 51 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 bcd1729 locus 12.6 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 BCD1729 locus 33 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 BCD1729 locus 40.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD1729 locus 51 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 bcd1729 locus 24.82 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 bcd1729 locus 31.5 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xbcd1729 locus 9.9 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 bcd1729 locus 16.6 (cM) Automated name-based View Maps
cdo1509 locus 18.3 Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 cdo1509 locus 18.3 (cM) Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 cdo1509 locus 14.6 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 cdo1509 locus 15.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xcdo1509 locus 29.4 () Automated name-based View Maps
cdo1502y locus 22.4 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 cdo1502y locus 20.4 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 cdo1502y locus 19.3 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 cdo1502y locus 22.4 (cM) Automated name-based View Maps
III2.18d locus 25.4 Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 III2.18d locus 19.3 (cM) Automated name-based View Maps
p53m58n1 locus 32.4 Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 p53m58n1 locus 32.4 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 p53m58n1 locus 30.7 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 p53m58n1 locus 28.7 (cM) Automated name-based View Maps
RsaI/NBS1_12 locus 34 No other positions
RsaI/PK3Fa_3 locus 34 Oat - Oat-2013-KxO-RGA - RGA-2013_KO5 RsaI/PK3Fa_3 locus 67 (cM) Automated name-based View Maps
RsaI/PK3Fa_4 locus 34 Oat - Oat-2013-KxO-RGA - RGA-2013_KO17 RsaI/PK3Fa_4 locus 5 (cM) Automated name-based View Maps
9d locus 34 Oat - Oat-2013-KxO-RGA - RGA-2013_KO16_23 9d locus 25 (cM) Automated name-based View Maps
isu2287 locus 44.6 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C isu2287 locus 261.1 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 isu2287 locus 44.6 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 isu2287 locus 30.7 () Automated name-based View Maps
RsaI/PK4R1b_1 locus 49.3 Oat - Oat-2013-KxO-RGA - RGA-2013_KO5 RsaI/PK4R1b_1 locus 44 (cM) Automated name-based View Maps
p41m88m11 locus 53.3 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 p41m88m11 locus 43.3 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 p41m88m11 locus 53.3 (cM) Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 p41m88m11 locus 40 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.