*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-HxZ-21
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-HxZ [ View Map Set Info ]
Map Name: Oat-2013-SNP-HxZ-21
Map Start: 21.18
Map Stop: 23.18
Features by Type:
5 locus
5 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-21
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c6696 locus 21.18 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c6696 locus 35.85 () Automated name-based View Maps
GMI_ES_CC2716 locus 21.18 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC2716 locus 36.6 () Automated name-based View Maps
GMI_ES_CC4005 locus 21.18 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES_CC4005_62 locus 181.1 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a GMI_ES_CC4005_62 locus 3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES_CC4005_62 locus 181.1 () Automated name-based View Maps
GMI_ES_CC18060 locus 21.18 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC18060 locus 35.82 () Automated name-based View Maps
GMI_ES02_c38960 locus 23.18 Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES02_c38960_346 locus 52 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c38960_346 locus 174.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES02_c38960_346 locus 6.7 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES02_c38960_346 locus 63.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c38960_346 locus 174.7 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES02_c38960_346 locus 56.48 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_ES02_c38960_346 locus 0 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.