*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-HxZ-3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-HxZ [ View Map Set Info ]
Map Name: Oat-2013-SNP-HxZ-3
Map Start: 16.82
Map Stop: 62.14
Features by Type:
10 locus
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-3
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c15898 locus 16.82 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c15898 locus 43.84 () Automated name-based View Maps
GMI_DS_CC4575 locus 26.71 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_DS_CC4575 locus 56.5 () Automated name-based View Maps
GMI_ES17_c1086 locus 26.71 Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-9 GMI_ES17_c1086 locus 6.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c1086 locus 56.55 () Automated name-based View Maps
GMI_ES_CC13348 locus 29.9 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC13348 locus 53.64 () Automated name-based View Maps
GMI_ES02_c8034 locus 33.17 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c8034 locus 58.77 () Automated name-based View Maps
GMI_DS_CC4430 locus 43.38 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-8 GMI_DS_CC4430 locus 63.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_DS_CC4430 locus 74.94 () Automated name-based View Maps
GMI_ES01_c17040 locus 43.38 Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-19 GMI_ES01_c17040 locus 22.6 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c17040 locus 74.66 () Automated name-based View Maps
GMI_ES01_c284 locus 47.64 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-8 GMI_ES01_c284 locus 54.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c284 locus 81.6 () Automated name-based View Maps
GMI_ES02_c4091 locus 62.14 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES02_c4091 locus 48.98 () Automated name-based View Maps
GMI_ES02_c12621 locus 62.14 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES02_c12621 locus 49.28 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.