*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-KxO-3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-KxO [ View Map Set Info ]
Map Name: Oat-2013-SNP-KxO-3
Map Start: 21.1
Map Stop: 115.1
Features by Type:
8 locus
8 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-3
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_DS_CC2783 locus 21.1 Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_DS_CC2783 locus 120.05 () Automated name-based View Maps
GMI_ES_CC12738 locus 54.7 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES_CC12738 locus 46.38 () Automated name-based View Maps
GMI_ES02_c6368 locus 61.9 Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-1 GMI_ES02_c6368 locus 3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES02_c6368 locus 40.57 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-10 GMI_ES02_c6368 locus 69.27 () Automated name-based View Maps
GMI_DS_CC2357 locus 71.5 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_DS_CC2357 locus 36.29 () Automated name-based View Maps
GMI_ES15_c3908 locus 81.1 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES15_c3908 locus 24.53 () Automated name-based View Maps
GMI_ES15_c10106 locus 85.9 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES15_c10106 locus 28.04 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-10 GMI_ES15_c10106 locus 55.43 () Automated name-based View Maps
GMI_ES_CC10812 locus 112.6 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES_CC10812 locus 46.12 () Automated name-based View Maps
GMI_ES17_c1918 locus 115.1 Oat - Avena_2013_SNP - Avena_2013_SNP_1C GMI_ES17_c1918 locus 46.1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.