*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-OxP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-OxP-12
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-OxP [ View Map Set Info ]
Map Name: Oat-2013-SNP-OxP-12
Map Start: 4.3
Map Stop: 98.8
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES15_c285 locus 4.3 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-19 GMI_ES15_c285 locus 29 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-6 GMI_ES15_c285 locus 4.46 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_8A GMI_ES15_c285 locus 53.39 () Automated name-based View Maps
GMI_ES01_c10387 locus 16.5 Oat - Avena_2013_SNP - Avena_2013_SNP_8A GMI_ES01_c10387 locus 63.46 () Automated name-based View Maps
GMI_ES02_c15481 locus 52.1 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_ES02_c15481 locus 3.44 () Automated name-based View Maps
GMI_ES01_c15405 locus 68.3 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_ES01_c15405 locus 25.14 () Automated name-based View Maps
GMI_DS_CC7370 locus 69.4 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-5 GMI_DS_CC7370 locus 120 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_DS_CC7370 locus 26.43 () Automated name-based View Maps
GMI_ES17_c5832 locus 69.4 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_ES17_c5832 locus 26.43 () Automated name-based View Maps
GMI_DS_CC9316 locus 73.6 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_DS_CC9316 locus 31.25 () Automated name-based View Maps
GMI_ES_CC12468 locus 78.6 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_ES_CC12468 locus 37.5 () Automated name-based View Maps
GMI_ES17_c3975 locus 98.8 Oat - Avena_2013_SNP - Avena_2013_SNP_21D GMI_ES17_c3975 locus 65.63 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.