*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-OxP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-OxP-14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-OxP [ View Map Set Info ]
Map Name: Oat-2013-SNP-OxP-14
Map Start: 15.4
Map Stop: 71.5
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-14
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c8445 locus 15.4 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c8445 locus 18.54 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-11 GMI_ES01_c8445 locus 75.6 () Automated name-based View Maps
GMI_DS_oPt-12128 locus 15.4 Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-16 GMI_DS_oPt-12128 locus 2.4 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-11 GMI_DS_oPt-12128 locus 75.6 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-28 GMI_DS_oPt-12128 locus 14.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_DS_oPt-12128 locus 18.61 () Automated name-based View Maps
GMI_ES17_c8444 locus 30.5 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES17_c8444 locus 39.09 () Automated name-based View Maps
GMI_ES01_c9910 locus 34.7 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c9910 locus 43.32 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-10 GMI_ES01_c9910 locus 3.34 () Automated name-based View Maps
GMI_ES17_c5162 locus 35.8 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES17_c5162 locus 44.82 () Automated name-based View Maps
GMI_ES01_c4288 locus 35.8 Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-10 GMI_ES01_c4288 locus 5.42 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c4288 locus 44.82 () Automated name-based View Maps
GMI_ES_CC6557 locus 39.4 Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-17 GMI_ES_CC6557 locus 4.8 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-10 GMI_ES_CC6557 locus 7.55 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES_CC6557 locus 48.17 () Automated name-based View Maps
GMI_ES15_c2822 locus 42.3 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES15_c2822 locus 51.03 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-8 GMI_ES15_c2822 locus 8.9 () Automated name-based View Maps
GMI_ES17_c17722 locus 51.1 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES17_c17722 locus 62.6 () Automated name-based View Maps
GMI_ES01_c14001 locus 57.6 Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c14001 locus 67.17 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-8 GMI_ES01_c14001 locus 42.3 () Automated name-based View Maps
GMI_ES02_c23736 locus 71.5 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-6 GMI_ES02_c23736 locus 127.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES02_c23736 locus 85.06 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.