*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-OxP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-OxP-8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-OxP [ View Map Set Info ]
Map Name: Oat-2013-SNP-OxP-8
Map Start: 1.1
Map Stop: 104.1
Features by Type:
14 locus
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-8
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES17_c4266 locus 1.1 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES17_c4266 locus 118.43 () Automated name-based View Maps
GMI_ES02_lrc37108 locus 10.4 Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-4 GMI_ES02_lrc37108 locus 21.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES02_lrc37108 locus 105.81 () Automated name-based View Maps
GMI_ES01_c1537 locus 13.3 Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-18 GMI_ES01_c1537 locus 60.8 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c1537 locus 102.26 () Automated name-based View Maps
GMI_ES01_c1307 locus 17.5 Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-4 GMI_ES01_c1307 locus 30.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c1307 locus 98.86 () Automated name-based View Maps
GMI_ES_CC3511 locus 20.4 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES_CC3511 locus 96.16 () Automated name-based View Maps
GMI_ES02_c10841 locus 20.4 Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-9 GMI_ES02_c10841 locus 59.4 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-11 GMI_ES02_c10841 locus 74.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES02_c10841 locus 96.16 () Automated name-based View Maps
GMI_ES01_c4491 locus 37.7 Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-4 GMI_ES01_c4491 locus 64.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c4491 locus 73.55 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-18 GMI_ES01_c4491 locus 26.9 () Automated name-based View Maps
GMI_ES15_c1710 locus 43.4 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES15_c1710 locus 69.45 () Automated name-based View Maps
GMI_ES15_c6115 locus 55.3 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES15_c6115 locus 53.64 () Automated name-based View Maps
GMI_ES02_c14555 locus 61.8 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES02_c14555 locus 46.05 () Automated name-based View Maps
GMI_ES01_c17486 locus 75.7 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c17486 locus 27.16 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-26 GMI_ES01_c17486 locus 16.5 () Automated name-based View Maps
GMI_ES15_c5315 locus 76.8 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES15_c5315 locus 25.52 () Automated name-based View Maps
GMI_ES02_c4277 locus 79.7 Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES02_c4277 locus 22.03 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-17 GMI_ES02_c4277 locus 17.82 () Automated name-based View Maps
GMI_ES15_c4877 locus 104.1 Oat - Oat-2016-SxH - Oat-2016-SxH_22 GMI_ES15_c4877_111 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES15_c4877_111 locus 125.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES15_c4877_111 locus 125.1 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_18 GMI_ES15_c4877_111 locus 14.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.