*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-PxG-7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-PxG [ View Map Set Info ]
Map Name: Oat-2013-SNP-PxG-7
Map Start: 22.3
Map Stop: 70.1
Features by Type:
12 locus
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-7
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c13415 locus 22.3 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES02_c13415 locus 39.88 () Automated name-based View Maps
GMI_ES17_c2976 locus 24.5 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES17_c2976 locus 37.94 () Automated name-based View Maps
GMI_ES01_c1287 locus 27.8 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c1287 locus 76.24 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-2 GMI_ES01_c1287 locus 44.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES01_c1287 locus 33.71 () Automated name-based View Maps
GMI_ES01_c3759 locus 33.5 Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-19 GMI_ES01_c3759 locus 4.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES01_c3759 locus 22.76 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-15 GMI_ES01_c3759 locus 21.7 () Automated name-based View Maps
GMI_ES15_c2524 locus 33.5 Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-19 GMI_ES15_c2524 locus 8.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES15_c2524 locus 23.64 () Automated name-based View Maps
GMI_ES01_c3919 locus 33.5 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES01_c3919 locus 23.26 () Automated name-based View Maps
GMI_ES17_c1727 locus 37.6 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES17_c1727 locus 27.68 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-19 GMI_ES17_c1727 locus 11.3 () Automated name-based View Maps
GMI_ES02_c13817 locus 40.4 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES02_c13817 locus 24.92 () Automated name-based View Maps
GMI_ES02_c13393 locus 43.1 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES02_c13393 locus 20.15 () Automated name-based View Maps
GMI_ES02_c17401 locus 45.8 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES02_c17401 locus 17.14 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-15 GMI_ES02_c17401 locus 40.9 () Automated name-based View Maps
GMI_ES_CC2606 locus 49.7 Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-7 GMI_ES_CC2606 locus 68.77 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-19 GMI_ES_CC2606 locus 19.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES_CC2606 locus 15.39 () Automated name-based View Maps
GMI_ES15_c10680 locus 70.1 Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-7 GMI_ES15_c10680 locus 57.58 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.