*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SNP-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SNP-PxG-10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SNP-PxG [ View Map Set Info ]
Map Name: Oat-2013-SNP-PxG-10
Map Start: 26.9
Map Stop: 123.6
Features by Type:
12 locus
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-10
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c18122 locus 26.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_24 GMI_ES01_c18122_404 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_19 GMI_ES01_c18122_404 locus 5.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
GMI_ES15_c1697 locus 62.9 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES15_c1697 locus 95.41 () Automated name-based View Maps
GMI_ES15_c858 locus 68.6 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES15_c858 locus 88.45 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-7 GMI_ES15_c858 locus 53.2 () Automated name-based View Maps
GMI_ES02_c4066 locus 71.9 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES02_c4066 locus 84.19 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-32 GMI_ES02_c4066 locus 38.6 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-14 GMI_ES02_c4066 locus 25.72 () Automated name-based View Maps
GMI_ES01_c14065 locus 71.9 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES01_c14065 locus 84.61 () Automated name-based View Maps
GMI_DS_A3_435 locus 77.6 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_A3_435 locus 77.43 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-7 GMI_DS_A3_435 locus 62.6 () Automated name-based View Maps
GMI_ES02_c247 locus 77.6 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES02_c247 locus 77.88 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-7 GMI_ES02_c247 locus 62.6 () Automated name-based View Maps
GMI_DS_CC5652 locus 86.2 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_CC5652 locus 68.47 () Automated name-based View Maps
GMI_ES01_c2163 locus 93.3 Oat - Oat-2013-SNP-OxT - Oat-2013-SNP-OxT-11 GMI_ES01_c2163 locus 4.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES01_c2163 locus 61.22 () Automated name-based View Maps
GMI_ES17_c21168 locus 93.3 Oat - Oat-2013-SNP-KxO - Oat-2013-SNP-KxO-24 GMI_ES17_c21168 locus 4.7 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-1 GMI_ES17_c21168 locus 123 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES17_c21168 locus 61.09 () Automated name-based View Maps
GMI_ES_CC10109 locus 123.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_CC10109_283 locus 14.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES_CC10109_283 locus 14.3 () Automated name-based View Maps
GMI_ES02_c2053 locus 123.6 Oat - Oat-2016-PxG - Oat-2016-PxG_10 GMI_ES02_c2053_415 locus 18.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES02_c2053_415 locus 17.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES02_c2053_415 locus 17.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.