*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SxW-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SxW-RGA_AswAC
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SxW-RGA [ View Map Set Info ]
Map Name: Oat-2013-SxW-RGA_AswAC
Map Start: 0 cM
Map Stop: 155 cM
Features by Type:
64 locus
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 64.       Previous | of 3 | Next
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswAC
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
isu2117 locus 73 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-A ISU2117 locus 124.2 () Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-B XIsu2117 locus 82.2 () Automated name-based View Maps
RsaI/PK4R1a_G locus 76 No other positions
RsaI/PK4R1a_I locus 76 No other positions
AluI/PK3Fa_A locus 76 No other positions
AluI/PK3Fb_B locus 76 No other positions
MseI/PK4R1b_H locus 76 No other positions
HaeIII/PK3Fa_F locus 76 No other positions
HaeIII/PK3Fb_A locus 76 No other positions
HaeIII/PK3Fb_P locus 76 No other positions
isu1755 locus 76 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ISU1755 locus 80.6 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu1755 locus 46 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ISU1755 locus 80.6 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-D ISU1755B locus 288.9 () Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_5 isu1755 locus 4 () Automated name-based View Maps
isu1667 locus 78 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-D ISU1667 locus 313.7 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu1667 locus 49 (cM) Automated name-based View Maps
S-120b locus 81 No other positions
AluI/PK4R1b_E locus 81 No other positions
cisu45 locus 84 Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC cisu45 locus 54 (cM) Automated name-based View Maps
isu1838 locus 86 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-D ISU1838 locus 243.5 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu1838 locus 56.1 (cM) Automated name-based View Maps
isu2184 locus 90 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C ISU2184 locus 182.5 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu2184 locus 62.1 (cM) Automated name-based View Maps
isu1703B locus 92 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-F ISU1703B locus 115.9 () Automated name-based View Maps
RsaI/PK4R1b_G locus 92 No other positions
AluI/PK4R1b_I locus 92 No other positions
RsaI/PK3Fa_K locus 101 No other positions
HaeIII/PK3Fa_H locus 104 No other positions
rz682 locus 107 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7A rz682 locus 54.1 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-7A rz682 locus 134.43 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xrz682 locus 78.6 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-7H RZ682 locus 176.2 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC rz682 locus 78.1 (cM) Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-9 RZ682 locus 45.65 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-6 RZ682 locus 91.4 () Automated name-based View Maps
HaeIII/NBS2_F locus 110 No other positions
isu1628 locus 114 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C ISU1628 locus 213.8 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu1628 locus 85.1 (cM) Automated name-based View Maps
isu2192 locus 119 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-A ISU2192 locus 178.1 () Automated name-based View Maps
Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC isu2192 locus 90.1 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-B Xisu2192 locus 237.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.