*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SxW-RGA
(Reference Set)
Diploid oat-Diploid Oat, Iowa St.
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SxW-RGA_AswG Avena-Wise-C
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SxW-RGA [ View Map Set Info ]
Map Name: Oat-2013-SxW-RGA_AswG
Map Start: 0 cM
Map Stop: 115 cM
Features by Type:
51 locus
51 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 51.       of 3 | Next
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswG
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rz390C locus 0 No other positions
S-9204 locus 2 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN22 S-9204 locus 0.8 (cM) Automated name-based View Maps
RsaI/NBS3_A locus 10 No other positions
RsaI/NBS3_C locus 10 No other positions
HaeIII/PK3Fa_A locus 10 No other positions
AluI/NBS2_D locus 10 No other positions
SgSatII3 locus 10 Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 SgSATII3 locus 64 (cM) Automated name-based View Maps
cisu52 locus 15 No other positions
isu1600 locus 22 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G ISU1600 locus 78.2 () Automated name-based View Maps
HaeIII/NBS1_I locus 25 No other positions
RsaI/NBS1_B locus 25 No other positions
AluI/NBS3_A locus 25 No other positions
isu1426 locus 31 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C ISU1426 locus 22.9 () Automated name-based View Maps
AluI/PK3Fb_L locus 31 No other positions
RsaI/NBS3_I locus 42 No other positions
HaeIII/PK3Fb_L locus 42 No other positions
AluI/PK3Fa_B locus 42 No other positions
AluI/PK3Fa_I locus 42 No other positions
HaeIII/PK3Fa_D locus 42 No other positions
isu1330 locus 55 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G ISU1330 locus 177 () Automated name-based View Maps
9a locus 56 Oat - Oat-2013-KxO-RGA - RGA-2013_KO19_27 9a locus 25 (cM) Automated name-based View Maps
RP4a81b locus 56 No other positions
AluI/PK3Fa_J locus 56 No other positions
AluI/PK3Fb_C locus 62 No other positions
AluI/PK4R1b_H locus 62 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.