*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2014-CrownRust
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2014-AsbxMN_26
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2014-CrownRust [ View Map Set Info ]
Map Name: Oat-2014-AsbxMN_26
Map Start: 0 cM
Map Stop: 110.34 cM
Features by Type:
115 locus
115 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 115.       of 5 | Next
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_26
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_DS_CC3461_212 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_DS_CC3461_212 locus 0 () Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg13 GMI_DS_CC3461_212 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_DS_CC3461_212 locus 0 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_DS_CC3461_212 locus 0 () Automated name-based View Maps
GMI_ES16_c6961_501 locus 7.61 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh13 GMI_ES16_c6961_501 locus 9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_ES16_c6961_501 locus 7.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES16_c6961_501 locus 7.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES16_c6961_501 locus 7.8 () Automated name-based View Maps
Excalibur_c64540_275 locus 13.94 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 Excalibur_c64540_275 locus 13.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 Excalibur_c64540_275 locus 13.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_21 Excalibur_c64540_275 locus 14 () Automated name-based View Maps
GMI_ES15_c2890_383 locus 19.95 Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_ES15_c2890_383 locus 3.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_ES15_c2890_383 locus 20.1 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-38 GMI_ES15_c2890_383 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES15_c2890_383 locus 18.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES15_c2890_383 locus 18.2 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES15_c2890_383 locus 74.8 () Automated name-based View Maps
GMI_ES05_c8781_497 locus 32.72 Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_ES05_c8781_497 locus 33 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_ES05_c8781_497 locus 26.2 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8781_497 locus 26.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_2 GMI_ES05_c8781_497 locus 26.2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_ES05_c8781_497 locus 11 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES05_c8781_497 locus 26.2 () Automated name-based View Maps
GMI_ES02_c5798_637 locus 32.72 Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_ES02_c5798_637 locus 33 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_ES02_c5798_637 locus 11 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES02_c5798_637 locus 26.2 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_ES02_c5798_637 locus 26.2 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES02_c5798_637 locus 52.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES02_c5798_637 locus 26.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_2 GMI_ES02_c5798_637 locus 26.2 () Automated name-based View Maps
GMI_ES03_c4853_282 locus 35.34 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES03_c4853_282 locus 28.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_21 GMI_ES03_c4853_282 locus 35.6 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_2 GMI_ES03_c4853_282 locus 28.9 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES03_c4853_282 locus 44.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES03_c4853_282 locus 28.9 () Automated name-based View Maps
GMI_ES14_c3270_230 locus 36.29 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3270_230 locus 29.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES14_c3270_230 locus 29.1 () Automated name-based View Maps
GMI_GBS_25134 locus 38.56 Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_GBS_25134 locus 15.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_GBS_25134 locus 31 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_GBS_25134 locus 31 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_GBS_25134 locus 31 (cM) Automated name-based View Maps
GMI_DS_oPt-13608_271 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_DS_oPt-13608_271 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_DS_oPt-13608_271 locus 36.7 () Automated name-based View Maps
Excalibur_rep_c102654_375 locus 39.19 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 Excalibur_rep_c102654_375 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 Excalibur_rep_c102654_375 locus 36.7 () Automated name-based View Maps
GMI_ES15_c12217_292 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES15_c12217_292 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES15_c12217_292 locus 36.7 () Automated name-based View Maps
GMI_ES15_c12087_445 locus 39.19 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES15_c12087_445 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES15_c12087_445 locus 36.7 () Automated name-based View Maps
GMI_ES14_c16356_92 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c16356_92 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES14_c16356_92 locus 36.7 () Automated name-based View Maps
GMI_ES05_c13541_191 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c13541_191 locus 36.7 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_ES05_c13541_191 locus 36.7 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES05_c13541_191 locus 22.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES05_c13541_191 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_ES05_c13541_191 locus 16 () Automated name-based View Maps
GMI_ES02_c5542_474 locus 39.19 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES02_c5542_474 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES02_c5542_474 locus 36.7 () Automated name-based View Maps
wsnp_BF482403B_Ta_1_1 locus 39.19 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 wsnp_BF482403B_Ta_1_1 locus 36.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_7B wsnp_BF482403B_Ta_1_1 locus 70.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_7A wsnp_BF482403B_Ta_1_1 locus 137.2 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_7B IWA495 locus 80.79 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 wsnp_BF482403B_Ta_1_1 locus 36.7 () Automated name-based View Maps
RAC875_rep_c112043_129 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 RAC875_rep_c112043_129 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 RAC875_rep_c112043_129 locus 36.7 () Automated name-based View Maps
GMI_ES14_c16511_343 locus 39.19 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES14_c16511_343 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c16511_343 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES14_c16511_343 locus 22.1 () Automated name-based View Maps
GMI_ES15_c378_669 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES15_c378_669 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES15_c378_669 locus 36.7 () Automated name-based View Maps
GMI_ES02_c1165_708 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES02_c1165_708 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES02_c1165_708 locus 36.7 () Automated name-based View Maps
GMI_GBS_57308 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_GBS_57308 locus 36.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_GBS_57308 locus 36.7 () Automated name-based View Maps
GMI_ES17_c11978_361 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES17_c11978_361 locus 36.7 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_ES17_c11978_361 locus 36.7 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_ES17_c11978_361 locus 16 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_ES17_c11978_361 locus 22.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_ES17_c11978_361 locus 36.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_20D GMI_ES17_c11978 locus 27.95 () Automated name-based View Maps
GMI_GBS_23907 locus 39.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_GBS_23907 locus 35.9 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_GBS_23907 locus 16 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_GBS_23907 locus 35.9 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_GBS_23907 locus 35.9 (cM) Automated name-based View Maps
GMI_DS_CC4263_119 locus 39.19 Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg13 GMI_DS_CC4263_119 locus 36.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 GMI_DS_CC4263_119 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 GMI_DS_CC4263_119 locus 16 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_DS_CC4263_119 locus 36.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_14 GMI_DS_CC4263_119 locus 22.1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.