*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2014-CrownRust
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2014-AsbxMN_7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2014-CrownRust [ View Map Set Info ]
Map Name: Oat-2014-AsbxMN_7
Map Start: 0 cM
Map Stop: 96.6 cM
Features by Type:
70 locus
70 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 70.       of 3 | Next
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_ES01_c17867_331 locus 0 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES01_c17867_331 locus 0.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_c17867_331 locus 25.2 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES01_c17867_331 locus 96.6 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_ES01_c17867_331 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_c17867_331 locus 25.2 () Automated name-based View Maps
GMI_GBS_77957 locus 6.42 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_77957 locus 9.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_77957 locus 36.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_77957 locus 19.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_77957 locus 36.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-31 GMI_GBS_77957 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_GBS_77957 locus 21.5 () Automated name-based View Maps
GMI_GBS_3516 locus 6.73 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_3516 locus 38.2 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_3516 locus 11.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_3516 locus 38.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_GBS_3516 locus 23.7 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_GBS_3516 locus 6.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-31 GMI_GBS_3516 locus 5.04 (cM) Automated name-based View Maps
GMI_GBS_61050 locus 7.68 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_61050 locus 11.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_61050 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP8 GMI_GBS_61050 locus 61.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_61050 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_16b GMI_GBS_61050 locus 34.3 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_9 GMI_GBS_61050 locus 8.2 () Automated name-based View Maps
GMI_DS_LB_7090 locus 8.31 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_LB_7090 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_DS_LB_7090 locus 28.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_LB_7090 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_DS_LB_7090 locus 11.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_DS_LB_7090 locus 172.1 () Automated name-based View Maps
wsnp_Ex_rep_c67636_66293429 locus 8.31 Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_5A wsnp_Ex_rep_c67636_66293429 locus 36.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM25-Berkut-x-CItr15134 - Wheat-2018-NAM25-BxCItr15134_5A wsnp_Ex_rep_c67636_66293429 locus 51.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_5A wsnp_Ex_rep_c67636_66293429 locus 52.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_5A wsnp_Ex_rep_c67636_66293429 locus 53.3 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_5A IWA5431 locus 15.53 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 wsnp_Ex_rep_c67636_66293429 locus 40.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_5A wsnp_Ex_rep_c67636_66293429 locus 49.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 wsnp_Ex_rep_c67636_66293429 locus 40.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM18-Berkut-x-CItr15144 - Wheat-2018-NAM18-BxCItr15144_5A wsnp_Ex_rep_c67636_66293429 locus 158.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_5A wsnp_Ex_rep_c67636_66293429 locus 29.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_5A wsnp_Ex_rep_c67636_66293429 locus 41.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_5A wsnp_Ex_rep_c67636_66293429 locus 47.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_5A wsnp_Ex_rep_c67636_66293429 locus 63.22 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_5A wsnp_Ex_rep_c67636_66293429 locus 49.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_5A wsnp_Ex_rep_c67636_66293429 locus 46.4 () Automated name-based View Maps
GMI_DS_oPt-14552_101 locus 8.31 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_oPt-14552_101 locus 40.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_oPt-14552 locus 22.02 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_oPt-14552_101 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_DS_oPt-14552_101 locus 11.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_DS_oPt-14552_101 locus 172.1 () Automated name-based View Maps
GMI_ES15_c10866_209 locus 8.31 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES15_c10866_209 locus 11.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES15_c10866_209 locus 172.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES15_c10866 locus 23.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES15_c10866_209 locus 40.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES15_c10866_209 locus 40.3 () Automated name-based View Maps
GMI_ES15_c5533_631 locus 8.31 Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_ES15_c5533_631 locus 8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES15_c5533_631 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES15_c5533_631 locus 84.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES15_c5533_631 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES15_c5533_631 locus 172.1 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES15_c5533_631 locus 11.5 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-31 GMI_ES15_c5533_631 locus 22.89 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-25 GMI_ES15_c5533_631 locus 24.68 (cM) Automated name-based View Maps
GMI_GBS_18001 locus 8.94 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_18001 locus 42.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_18001 locus 24.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_18001 locus 42.6 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_GBS_18001 locus 169.8 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_GBS_18001 locus 8.6 () Automated name-based View Maps
tplb0044k10_847 locus 9.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 tplb0044k10_847 locus 43.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_5A tplb0044k10_847 locus 176.31 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 tplb0044k10_847 locus 43.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_5B tplb0044k10_847 locus 141.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_5B tplb0044k10_847 locus 152 () Automated name-based View Maps
GMI_ES17_c5666_258 locus 9.25 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES17_c5666_258 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES17_c5666_258 locus 15.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES17_c5666_258 locus 25.5 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES17_c5666_258 locus 82.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES17_c5666 locus 27.27 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES17_c5666_258 locus 43.4 () Automated name-based View Maps
GMI_ES02_c34690_199 locus 9.25 Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES02_c34690_199 locus 82.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES02_c34690_199 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES02_c34690_199 locus 25.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES02_c34690 locus 26.63 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES02_c34690_199 locus 15.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES02_c34690_199 locus 43.4 () Automated name-based View Maps
GMI_ES03_lrc23007_427 locus 9.25 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES03_lrc23007_427 locus 42.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES03_lrc23007_427 locus 42.6 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES03_lrc23007_427 locus 82.1 () Automated name-based View Maps
GMI_ES02_c1481_139 locus 9.25 Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES02_c1481_139 locus 82.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES02_c1481_139 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES02_c1481_139 locus 15.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES02_c1481_139 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES02_c1481_139 locus 25.5 () Automated name-based View Maps
GMI_ES01_c8337_431 locus 9.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_c8337_431 locus 44.7 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES01_c8337_431 locus 27.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES01_c8337 locus 27.34 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_c8337_431 locus 44.7 () Automated name-based View Maps
GMI_DS_LB_1821 locus 9.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_LB_1821 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_DS_LB_1821 locus 15.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_LB_1821 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_DS_LB_1821 locus 25.5 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_DS_LB_1821 locus 82.1 () Automated name-based View Maps
GMI_GBS_14868 locus 9.25 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_14868 locus 40.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_14868 locus 40.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_16b GMI_GBS_14868 locus 34.3 () Automated name-based View Maps
GMI_GBS_6566 locus 9.25 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_6566 locus 27.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_6566 locus 44.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_6566 locus 44.7 () Automated name-based View Maps
GMI_GBS_109228 locus 9.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_109228 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_109228 locus 15.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_109228 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_109228 locus 25.5 () Automated name-based View Maps
GMI_DS_CC9093_95 locus 9.25 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_CC9093 locus 26.63 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_DS_CC9093_95 locus 82.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_CC9093_95 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_CC9093_95 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_DS_CC9093_95 locus 15.2 () Automated name-based View Maps
GMI_DS_CC9448_443 locus 9.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_CC9448_443 locus 44.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_CC9448 locus 27.33 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_CC9448_443 locus 44.7 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_DS_CC9448_443 locus 27.2 () Automated name-based View Maps
GMI_GBS_12492 locus 9.57 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_12492 locus 42.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_12492 locus 42.6 () Automated name-based View Maps
GMI_ES22_c2572_214 locus 9.89 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES22_c2572_214 locus 42.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES22_c2572_214 locus 42.6 () Automated name-based View Maps
GMI_GBS_720 locus 9.89 Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_GBS_720 locus 82.1 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_720 locus 15.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_720 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_720 locus 25.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_720 locus 43.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.