*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-AxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-AxM_28b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-AxM [ View Map Set Info ]
Map Name: Oat-2016-AxM_28b
Map Start: 0.00
Map Stop: 68.20
Features by Type:
68 locus
68 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 68.       of 3 | Next
Oat - Oat-2016-AxM - Oat-2016-AxM_28b
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES22_c567_627 locus 0.00 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES22_c567_627 locus 21.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c567_627 locus 57.50 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES22_c567_627 locus 34.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES22_c567_627 locus 31.10 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES22_c567_627 locus 64.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES22_c567_627 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
GMI_ES15_c9667_138 locus 0.00 Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES15_c9667_138 locus 31.10 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES15_c9667_138 locus 64.20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES15_c9667_138 locus 34.80 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES15_c9667_138 locus 21.10 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c9667_138 locus 57.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9667_138 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
GMI_ES02_c15898_126 locus 3.40 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c15898_126 locus 3.29 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES02_c15898_126 locus 32.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c15898_126 locus 42.40 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c15898 locus 43.84 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES02_c15898_126 locus 46.23 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES02_c15898_126 locus 31.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c15898_126 locus 42.40 () Automated name-based View Maps
GMI_ES15_c9973_548 locus 6.70 Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES15_c9973_548 locus 22.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9973_548 locus 7.60 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c9973_548 locus 52.70 () Automated name-based View Maps
GMI_ES03_c10711_406 locus 7.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c10711_406 locus 57.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c10711_406 locus 57.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES03_c10711_406 locus 31.27 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES03_c10711_406 locus 8.23 (cM) Automated name-based View Maps
GMI_ES03_c1068_262 locus 8.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c1068_262 locus 57.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c1068_262 locus 57.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES03_c1068_262 locus 9.49 (cM) Automated name-based View Maps
GMI_ES01_c233_61 locus 8.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES01_c233_61 locus 57.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES01_c233_61 locus 9.49 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES01_c233_61 locus 57.60 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c233 locus 61.09 () Automated name-based View Maps
GMI_ES_LB_11151 locus 8.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_LB_11151 locus 57.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES_LB_11151 locus 9.49 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_LB_11151 locus 57.60 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES_LB_11151 locus 27.04 (cM) Automated name-based View Maps
GMI_ES14_c11284_606 locus 8.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES14_c11284_606 locus 9.49 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES14_c11284_606 locus 26.43 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES14_c11284_606 locus 62.07 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c11284_606 locus 57.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c11284_606 locus 57.60 () Automated name-based View Maps
Excalibur_rep_c71389_92 locus 8.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 Excalibur_rep_c71389_92 locus 9.49 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 Excalibur_rep_c71389_92 locus 57.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 Excalibur_rep_c71389_92 locus 57.60 () Automated name-based View Maps
GMI_GBS_98449 locus 8.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_GBS_98449 locus 57.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_GBS_98449 locus 57.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_GBS_98449 locus 9.49 (cM) Automated name-based View Maps
Jagger_c8911_186 locus 8.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 Jagger_c8911_186 locus 9.49 (cM) Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_7A IWB36793 locus 230.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 Jagger_c8911_186 locus 57.60 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_7A Jagger_c8911_186 locus 176.30 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_7A Jagger_c8911_186 locus 210.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 Jagger_c8911_186 locus 57.60 () Automated name-based View Maps
GMI_ES02_c17401_928 locus 8.30 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES02_c17401_928 locus 53.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c17401_928 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES02_c17401_928 locus 19.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c17401_928 locus 9.80 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES02_c17401_928 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES02_c17401_928 locus 51.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c17401_928 locus 63.20 () Automated name-based View Maps
GMI_ES17_c1612_641 locus 8.30 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES17_c1612_641 locus 53.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c1612_641 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES17_c1612_641 locus 19.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c1612_641 locus 9.80 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c1612_641 locus 51.00 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c1612 locus 61.75 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c1612_641 locus 63.20 () Automated name-based View Maps
GMI_ES14_c14823_110 locus 8.60 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES14_c14823_110 locus 53.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c14823_110 locus 68.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c14823_110 locus 68.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES14_c14823_110 locus 19.20 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_c14823_110 locus 51.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES14_c14823_110 locus 10.12 (cM) Automated name-based View Maps
GMI_ES17_c2787_171 locus 8.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c2787_171 locus 68.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c2787_171 locus 10.12 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c2787_171 locus 68.50 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c2787_171 locus 51.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES17_c2787_171 locus 19.20 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES17_c2787_171 locus 28.23 (cM) Automated name-based View Maps
GMI_ES01_c1881_299 locus 9.20 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES01_c1881_299 locus 53.90 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES01_c1881_299 locus 27.84 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES01_c1881_299 locus 10.74 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES01_c1881_299 locus 68.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES01_c1881_299 locus 68.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES01_c1881_299 locus 19.20 () Automated name-based View Maps
Excalibur_c11598_581 locus 10.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 Excalibur_c11598_581 locus 69.90 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 Excalibur_c11598_581 locus 12.33 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 Excalibur_c11598_581 locus 69.90 () Automated name-based View Maps
GMI_ES17_c4526_333 locus 17.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c4526_333 locus 93.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c4526_333 locus 19.47 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c4526_333 locus 93.00 () Automated name-based View Maps
c12516_2 locus 18.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 c12516_2 locus 95.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 c12516_2 locus 20.50 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 c12516_2 locus 95.20 () Automated name-based View Maps
GENE-2790_35 locus 20.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GENE-2790_35 locus 96.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GENE-2790_35 locus 96.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GENE-2790_35 locus 22.58 (cM) Automated name-based View Maps
JD_c3938_507 locus 21.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 JD_c3938_507 locus 98.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 JD_c3938_507 locus 23.52 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 JD_c3938_507 locus 98.70 () Automated name-based View Maps
GMI_ES05_c16400_86 locus 21.80 Oat - Oat-2016-SxH - Oat-2016-SxH_21 GMI_ES05_c16400_86 locus 54.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES05_c16400_86 locus 100.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES05_c16400_86 locus 23.52 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES05_c16400_86 locus 112.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES05_c16400_86 locus 100.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES05_c16400_86 locus 102.80 () Automated name-based View Maps
GMI_ES02_c21041_639 locus 21.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c21041_639 locus 100.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES02_c21041_639 locus 112.90 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_21 GMI_ES02_c21041_639 locus 54.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c21041_639 locus 23.52 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c21041_639 locus 100.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES02_c21041_639 locus 102.80 () Automated name-based View Maps
RAC875_rep_c115149_515 locus 22.10 Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_6B RAC875_rep_c115149_515 locus 69.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 RAC875_rep_c115149_515 locus 100.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 RAC875_rep_c115149_515 locus 100.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 RAC875_rep_c115149_515 locus 23.84 (cM) Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_6B RAC875_rep_c115149_515 locus 66.20 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_6B RAC875_rep_c115149_515 locus 71.50 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6B IWB62307 locus 80.19 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.