*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-AxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-AxM_29
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-AxM [ View Map Set Info ]
Map Name: Oat-2016-AxM_29
Map Start: 0
Map Stop: 99.6
Features by Type:
63 locus
63 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 63.       of 3 | Next
Oat - Oat-2016-AxM - Oat-2016-AxM_29
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c25482_475 locus 0 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-11 GMI_ES02_c25482_475 locus 11.2 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES02_c25482_475 locus 32.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES02_c25482_475 locus 0 (cM) Automated name-based View Maps
GMI_ES01_c11741_182 locus 0 Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES01_c11741 locus 28.08 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES01_c11741_182 locus 32.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES01_c11741_182 locus 0 (cM) Automated name-based View Maps
GMI_GBS_78834 locus 0.3 Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_GBS_78834 locus 86.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_78834 locus 32.8 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 GMI_GBS_78834 locus 15.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_78834 locus 0.31 (cM) Automated name-based View Maps
GMI_ES01_c23001_372 locus 0.3 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES01_c23001_372 locus 0.31 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES01_c23001 locus 25.54 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES01_c23001_372 locus 32.8 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 GMI_ES01_c23001_372 locus 15.1 () Automated name-based View Maps
GMI_ES01_c10120_303 locus 0.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES01_c10120_303 locus 32.8 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES01_c10120_303 locus 0.31 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_34 GMI_ES01_c10120_303 locus 15.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES01_c10120 locus 25.54 () Automated name-based View Maps
GMI_ES02_c24184_389 locus 20.3 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES02_c24184_389 locus 19.77 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES02_c24184_389 locus 52.1 () Automated name-based View Maps
GMI_ES15_c5060_161 locus 20.3 Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES15_c5060_161 locus 0 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23b GMI_ES15_c5060_161 locus 41.9 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES15_c5060_161 locus 19.77 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES15_c5060_161 locus 52.1 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-6 GMI_ES15_c5060_161 locus 0.52 (cM) Automated name-based View Maps
GMI_ES02_c1819_259 locus 23.6 Oat - Oat-2016-SxH - Oat-2016-SxH_2 GMI_ES02_c1819_259 locus 63.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES02_c1819_259 locus 57.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES02_c1819 locus 44.02 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES02_c1819_259 locus 23.09 (cM) Automated name-based View Maps
GMI_ES15_c7265_401 locus 24.9 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES15_c7265_401 locus 24.36 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES15_c7265_401 locus 58.5 () Automated name-based View Maps
GMI_GBS_105875 locus 25.5 Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_GBS_105875 locus 42.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_GBS_105875 locus 7.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_105875 locus 24.99 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_105875 locus 60 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1c GMI_GBS_105875 locus 17 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_12 GMI_GBS_105875 locus 7.7 () Automated name-based View Maps
GMI_GBS_26321 locus 27.2 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_26321 locus 26.61 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_GBS_26321 locus 39.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_26321 locus 60.6 () Automated name-based View Maps
GMI_ES01_c9955_227 locus 28.1 Oat - Oat-2016-PxB - Oat-2016-PxB_12 GMI_ES01_c9955_227 locus 7.7 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES01_c9955_227 locus 8.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES01_c9955_227 locus 61.2 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23b GMI_ES01_c9955_227 locus 28.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES01_c9955_227 locus 27.56 (cM) Automated name-based View Maps
GMI_ES01_c20367_331 locus 28.7 Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES01_c20367 locus 49.55 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23b GMI_ES01_c20367_331 locus 28.7 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_12 GMI_ES01_c20367_331 locus 7.7 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_2 GMI_ES01_c20367_331 locus 65.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES01_c20367_331 locus 61.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES01_c20367_331 locus 28.19 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-6 GMI_ES01_c20367_331 locus 14.83 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES01_c20367_331 locus 8.4 () Automated name-based View Maps
GMI_GBS_102428 locus 30.4 Oat - Oat-2016-BxG - Oat-2016-BxG_1c GMI_GBS_102428 locus 19.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_102428 locus 62.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_102428 locus 29.81 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23b GMI_GBS_102428 locus 28.7 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-6 GMI_GBS_102428 locus 14.88 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_12 GMI_GBS_102428 locus 8.1 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_GBS_102428 locus 9.3 () Automated name-based View Maps
RAC875_c2808_784 locus 33.1 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6B RAC875_c2808_784 locus 18.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 RAC875_c2808_784 locus 62.9 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6B IWB56158 locus 36.69 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_6B RAC875_c2808_784 locus 18.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_6B RAC875_c2808_784 locus 16.8 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 RAC875_c2808_784 locus 32.48 (cM) Automated name-based View Maps
GMI_DS_LB_1802 locus 33.1 Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_DS_LB_1802 locus 34.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_DS_LB_1802 locus 32.48 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_DS_LB_1802 locus 62.9 () Automated name-based View Maps
wsnp_Ex_c2325_4355706 locus 39.2 Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_6A wsnp_Ex_c2325_4355706 locus 116.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6A wsnp_Ex_c2325_4355706 locus 12.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 wsnp_Ex_c2325_4355706 locus 38.54 (cM) Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_6A wsnp_Ex_c2325_4355706 locus 181.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_6A wsnp_Ex_c2325_4355706 locus 115.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6A wsnp_Ex_c2325_4355706 locus 130.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_6A wsnp_Ex_c2325_4355706 locus 138.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_6A wsnp_Ex_c2325_4355706 locus 190.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6A wsnp_Ex_c2325_4355706 locus 135.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_6A wsnp_Ex_c2325_4355706 locus 122.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6A wsnp_Ex_c2325_4355706 locus 140.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM20-Berkut-x-PI94567 - Wheat-2018-NAM20-BxPI94567_6A wsnp_Ex_c2325_4355706 locus 146.9 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6A IWA2795 locus 141.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6A wsnp_Ex_c2325_4355706 locus 132.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_6A wsnp_Ex_c2325_4355706 locus 149.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_6A wsnp_Ex_c2325_4355706 locus 157.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_6A wsnp_Ex_c2325_4355706 locus 161.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 wsnp_Ex_c2325_4355706 locus 67.8 () Automated name-based View Maps
tplb0045b09_1555 locus 39.2 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6B IWB74811 locus 127.05 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 tplb0045b09_1555 locus 38.54 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 tplb0045b09_1555 locus 67.8 () Automated name-based View Maps
GMI_GBS_58282 locus 39.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_58282 locus 68.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_GBS_58282 locus 14.6 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_GBS_58282 locus 30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_58282 locus 38.54 (cM) Automated name-based View Maps
GMI_ES05_c26171_192 locus 39.5 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES05_c26171_192 locus 38.54 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_ES05_c26171_192 locus 28.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES05_c26171_192 locus 69.4 () Automated name-based View Maps
GMI_ES03_c18720_462 locus 39.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES03_c18720_462 locus 68.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES03_c18720_462 locus 38.54 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1c GMI_ES03_c18720_462 locus 23.3 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES03_c18720_462 locus 14.1 () Automated name-based View Maps
GMI_ES_LB_11602 locus 39.5 Oat - Oat-2016-BxG - Oat-2016-BxG_1c GMI_ES_LB_11602 locus 23.3 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES_LB_11602 locus 14.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES_LB_11602 locus 38.54 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES_LB_11602 locus 68.2 () Automated name-based View Maps
GMI_GBS_70578 locus 39.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_GBS_70578 locus 68.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_GBS_70578 locus 14.6 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_GBS_70578 locus 38.54 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3b GMI_GBS_70578 locus 30 () Automated name-based View Maps
GMI_ES22_c20350_257 locus 39.8 Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES22_c20350_257 locus 14.6 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES22_c20350_257 locus 38.85 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES22_c20350_257 locus 69.6 () Automated name-based View Maps
Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg17 GMI_ES22_c20350_257 locus 113.2 () Automated name-based View Maps
GMI_ES22_c20081_313 locus 41.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES22_c20081_313 locus 70.2 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_12 GMI_ES22_c20081_313 locus 10.7 () Automated name-based View Maps
Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg17 GMI_ES22_c20081_313 locus 114.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC6 GMI_ES22_c20081_313 locus 15.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_4 GMI_ES22_c20081_313 locus 40.11 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.