*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-BxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-BxG_14b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-BxG [ View Map Set Info ]
Map Name: Oat-2016-BxG_14b
Map Start: 0
Map Stop: 59.9
Features by Type:
18 locus
18 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 18 of 18.
Oat - Oat-2016-BxG - Oat-2016-BxG_14b
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_DS_LB_1541 locus 0 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-13 GMI_DS_LB_1541 locus 34.28 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_DS_LB_1541 locus 55.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_DS_LB_1541 locus 74.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_DS_LB_1541 locus 55.2 (cM) Automated name-based View Maps
GMI_ES22_c12811_64 locus 4.6 Oat - Oat-2016-PxB - Oat-2016-PxB_8 GMI_ES22_c12811_64 locus 3.5 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES22_c12811_64 locus 47 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES22_c12811_64 locus 47.16 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_4a GMI_ES22_c12811_64 locus 12.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES22_c12811_64 locus 68.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES22_c12811_64 locus 0 () Automated name-based View Maps
GMI_ES_CC9916_519 locus 4.6 Oat - Oat-2016-PxB - Oat-2016-PxB_8 GMI_ES_CC9916_519 locus 3.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES_CC9916_519 locus 46.21 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES_CC9916_519 locus 1 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_11 GMI_ES_CC9916_519 locus 7.3 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES_CC9916_519 locus 46.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES_CC9916_519 locus 65.9 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-10 GMI_ES_CC9916_519 locus 4.28 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-13 GMI_ES_CC9916_519 locus 26.94 (cM) Automated name-based View Maps
GMI_ES22_c5928_822 locus 6.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES22_c5928_822 locus 60.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_11 GMI_ES22_c5928_822 locus 46.7 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-13 GMI_ES22_c5928_822 locus 21.14 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW26 GMI_ES22_c5928_822 locus 3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES22_c5928_822 locus 5.9 () Automated name-based View Maps
GMI_ES17_c6672_313 locus 6.7 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-13 GMI_ES17_c6672_313 locus 22.03 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES17_c6672_313 locus 4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES17_c6672_313 locus 62.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_11 GMI_ES17_c6672_313 locus 46.7 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW26 GMI_ES17_c6672_313 locus 3 () Automated name-based View Maps
GMI_ES15_c15112_317 locus 6.7 Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW26 GMI_ES15_c15112_317 locus 3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES15_c15112_317 locus 40.28 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES15_c15112_317 locus 40.1 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES15_c15112_317 locus 5.9 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-10 GMI_ES15_c15112_317 locus 15.57 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES15_c15112_317 locus 60.6 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-13 GMI_ES15_c15112_317 locus 20.56 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_4a GMI_ES15_c15112_317 locus 11.8 () Automated name-based View Maps
GMI_ES01_c9092_330 locus 28.8 Oat - Oat-2016-IL4 - Oat-2016-IL4_4 GMI_ES01_c9092_330 locus 15.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 GMI_ES01_c9092_330 locus 29 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES01_c9092_330 locus 48.3 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_11 GMI_ES01_c9092_330 locus 28 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES01_c9092_330 locus 18.36 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_8 GMI_ES01_c9092_330 locus 22.7 () Automated name-based View Maps
GMI_ES15_c316_208 locus 28.8 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES15_c316_208 locus 18.36 (cM) Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_11 GMI_ES15_c316_208 locus 28 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_8 GMI_ES15_c316_208 locus 22.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES15_c316_208 locus 48.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_4 GMI_ES15_c316_208 locus 15.3 () Automated name-based View Maps
GMI_GBS_57847 locus 47.8 Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_GBS_57847 locus 7.9 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_GBS_57847 locus 12 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_GBS_57847 locus 28.2 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_GBS_57847 locus 15.17 (cM) Automated name-based View Maps
GMI_ES02_c2281_159 locus 53 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES02_c2281_159 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES02_c2281_159 locus 1.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3a GMI_ES02_c2281_159 locus 1.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES02_c2281_159 locus 1.24 (cM) Automated name-based View Maps
GMI_ES15_c3385_376 locus 53 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES15_c3385_376 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES15_c3385_376 locus 1.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3a GMI_ES15_c3385_376 locus 1.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES15_c3385_376 locus 1.24 (cM) Automated name-based View Maps
GMI_ES01_c1513_651 locus 53 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES01_c1513_651 locus 1.24 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES01_c1513_651 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES01_c1513_651 locus 1.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3a GMI_ES01_c1513_651 locus 1.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_11 GMI_ES01_c1513_651 locus 49.4 () Automated name-based View Maps
GMI_ES02_c1604_552 locus 53 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES02_c1604_552 locus 1.24 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_3a GMI_ES02_c1604_552 locus 1.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES02_c1604_552 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES02_c1604_552 locus 1.3 () Automated name-based View Maps
GMI_GBS_8948 locus 53 Oat - Oat-2016-IL4 - Oat-2016-IL4_3a GMI_GBS_8948 locus 1.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_GBS_8948 locus 23.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_GBS_8948 locus 1.24 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_GBS_8948 locus 1.3 () Automated name-based View Maps
GMI_ES05_c1006_442 locus 53 Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_ES05_c1006_442 locus 1.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_ES05_c1006_442 locus 1.24 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES05_c1006_442 locus 23.2 () Automated name-based View Maps
GMI_ES02_c16231_321 locus 59.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_ES02_c16231_321 locus 18.3 () Automated name-based View Maps
GMI_DS_LB_10187 locus 59.9 Oat - Oat-2016-AxM - Oat-2016-AxM_8 GMI_DS_LB_10187 locus 0.6 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_11 GMI_DS_LB_10187 locus 0.62 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_DS_LB_10187 locus 18.3 () Automated name-based View Maps
GMI_GBS_116364 locus 59.9 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-40 GMI_GBS_116364 locus 4.17 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 GMI_GBS_116364 locus 18.3 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.