*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-BxG
(Reference Set)
Oat-Oat-2016-HxZ
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-BxG_1a Oat-2016-HxZ_ss4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-BxG [ View Map Set Info ]
Map Name: Oat-2016-BxG_1a
Map Start: 0.00
Map Stop: 56.20
Features by Type:
24 locus
24 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 24 of 24.
Oat - Oat-2016-BxG - Oat-2016-BxG_1a
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES_LB_11832 locus 0.00 Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES_LB_11832 locus 32.20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES_LB_11832 locus 72.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES_LB_11832 locus 10.40 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES_LB_11832 locus 120.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES_LB_11832 locus 129.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_LB_11832 locus 110.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_LB_11832 locus 110.10 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES_LB_11832 locus 93.22 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES_LB_11832 locus 33.88 (cM) Automated name-based View Maps
GMI_ES15_c7380_296 locus 3.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c7380_296 locus 106.70 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES15_c7380_296 locus 11.30 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c7380_296 locus 106.70 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES15_c7380_296 locus 108.60 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES15_c7380_296 locus 85.41 (cM) Automated name-based View Maps
GMI_ES02_c17401_928 locus 19.20 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES02_c17401_928 locus 53.90 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES02_c17401_928 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES02_c17401_928 locus 51.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES02_c17401_928 locus 8.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c17401_928 locus 63.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c17401_928 locus 9.80 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c17401_928 locus 63.20 () Automated name-based View Maps
GMI_ES17_c2787_171 locus 19.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c2787_171 locus 68.50 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES17_c2787_171 locus 8.60 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c2787_171 locus 51.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c2787_171 locus 10.12 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c2787_171 locus 68.50 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES17_c2787_171 locus 28.23 (cM) Automated name-based View Maps
GMI_ES14_c14823_110 locus 19.20 Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES14_c14823_110 locus 53.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c14823_110 locus 68.50 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_c14823_110 locus 51.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES14_c14823_110 locus 10.12 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c14823_110 locus 68.50 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES14_c14823_110 locus 8.60 () Automated name-based View Maps
GMI_ES01_c1881_299 locus 19.20 Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES01_c1881_299 locus 9.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES01_c1881_299 locus 68.80 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES01_c1881_299 locus 27.84 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES01_c1881_299 locus 53.90 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES01_c1881_299 locus 10.74 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES01_c1881_299 locus 68.80 () Automated name-based View Maps
GMI_ES17_c1612_641 locus 19.20 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c1612_641 locus 9.80 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES17_c1612_641 locus 53.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c1612_641 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c1612_641 locus 51.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c1612_641 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES17_c1612_641 locus 8.30 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c1612 locus 61.75 () Automated name-based View Maps
GMI_ES15_c9973_548 locus 22.90 Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c9973_548 locus 6.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9973_548 locus 7.60 (cM) Automated name-based View Maps
GMI_ES17_c9625_419 locus 22.90 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES17_c9625_419 locus 39.11 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c9625_419 locus 40.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES17_c9625_419 locus 68.90 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c9625 locus 56.52 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c9625_419 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c9625_419 locus 56.50 () Automated name-based View Maps
GMI_ES15_c3049_286 locus 22.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c3049_286 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c3049_286 locus 56.50 () Automated name-based View Maps
GMI_ES15_c2802_625 locus 22.90 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_c2802 locus 58.21 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c2802_625 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c2802_625 locus 56.50 () Automated name-based View Maps
GMI_ES_CC6497_157 locus 22.90 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC6497 locus 59.59 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_CC6497_157 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_CC6497_157 locus 56.50 () Automated name-based View Maps
GMI_DS_LB_7894 locus 22.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_DS_LB_7894 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_DS_LB_7894 locus 56.50 () Automated name-based View Maps
GMI_ES07_c2953_690 locus 22.90 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES07_c2953_690 locus 52.27 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES07_c2953_690 locus 56.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES07_c2953_690 locus 56.90 () Automated name-based View Maps
GMI_ES_LB_4286 locus 22.90 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES_LB_4286 locus 40.54 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_LB_4286 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES_LB_4286 locus 40.20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES_LB_4286 locus 26.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_LB_4286 locus 56.50 () Automated name-based View Maps
GMI_ES02_c16349_294 locus 22.90 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c16349 locus 56.99 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES02_c16349_294 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c16349_294 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c16349_294 locus 56.50 () Automated name-based View Maps
GMI_ES03_c15150_160 locus 22.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c15150_160 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES03_c15150_160 locus 2.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c15150_160 locus 56.50 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES03_c15150_160 locus 41.25 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES03_c15150_160 locus 40.20 () Automated name-based View Maps
GMI_ES02_c37239_433 locus 29.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c37239_433 locus 42.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c37239_433 locus 42.20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES02_c37239_433 locus 15.80 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES02_c37239_433 locus 61.40 () Automated name-based View Maps
GMI_ES15_c9667_138 locus 31.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c9667_138 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES15_c9667_138 locus 21.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9667_138 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES15_c9667_138 locus 64.20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES15_c9667_138 locus 34.80 () Automated name-based View Maps
GMI_ES22_c567_627 locus 31.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES22_c567_627 locus 21.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES22_c567_627 locus 34.80 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES22_c567_627 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES22_c567_627 locus 64.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES22_c567_627 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
GMI_ES02_c13954_216 locus 33.30 Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES02_c13954_216 locus 66.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c13954_216 locus 32.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c13954_216 locus 32.50 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES02_c13954_216 locus 13.90 () Automated name-based View Maps
GMI_GBS_106778 locus 40.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_GBS_106778 locus 28.30 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_GBS_106778 locus 10.70 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_GBS_106778 locus 33.48 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_GBS_106778 locus 28.30 () Automated name-based View Maps
GMI_ES17_c11370_658 locus 49.90 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c11370_658 locus 8.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c11370_658 locus 21.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c11370_658 locus 21.10 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES17_c11370_658 locus 3.50 () Automated name-based View Maps
GMI_ES03_c10320_532 locus 56.20 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES03_c10320_532 locus 9.66 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_38 GMI_ES03_c10320_532 locus 6.97 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28a GMI_ES03_c10320_532 locus 6.70 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_20 GMI_ES03_c10320_532 locus 66.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c10320_532 locus 14.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c10320_532 locus 14.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES03_c10320_532 locus 15.40 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES03_c10320_532 locus 0.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.