*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-Consensus
(Reference Set) 		Oat-Oat-2018-Consensus
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-Consensus-15 Oat-2018-Consensus_Mrg15
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-Consensus [ View Map Set Info ]
Map Name: Oat-2016-Consensus-15
Map Start: -11.30
Map Stop: 94.00
Features by Type:
841 locus
841 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 841.       of 34 | Next
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_49129 locus -11.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_49129 locus -11.30 () Automated name-based View Maps
avgbs_39801 locus -7.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_39801 locus -7.10 () Automated name-based View Maps
avgbs_7862 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_7862 locus 0.00 () Automated name-based View Maps
avgbs_39899 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_39899 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1b avgbs_39899 locus 51.90 () Automated name-based View Maps
avgbs_56558 locus 0.00 Oat - Oat-2016-OxT - Oat-2016-OxT_1b avgbs_56558 locus 51.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_56558 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_20 avgbs_56558 locus 0.00 () Automated name-based View Maps
GMI_ES01_c2402_390 locus 0.00 Oat - Oat-2016-OxT - Oat-2016-OxT_1b GMI_ES01_c2402_390 locus 51.90 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_17b GMI_ES01_c2402_390 locus 95.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES01_c2402_390 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_20 GMI_ES01_c2402_390 locus 1.00 () Automated name-based View Maps
GMI_ES_CC4334_304 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES_CC4334_304 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_17b GMI_ES_CC4334_304 locus 95.60 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_20 GMI_ES_CC4334_304 locus 1.00 () Automated name-based View Maps
avgbs_203539 locus 1.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_203539 locus 1.50 () Automated name-based View Maps
GMI_ES15_c7706_583 locus 1.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES15_c7706_583 locus 1.90 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_2C GMI_ES15_c7706 locus 2.96 () Automated name-based View Maps
avgbs_224979 locus 2.00 Oat - Oat-2016-SxH - Oat-2016-SxH_20 avgbs_224979 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_224979 locus 2.00 () Automated name-based View Maps
GMI_ES01_c10912_295 locus 2.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES01_c10912_295 locus 2.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_17b GMI_ES01_c10912_295 locus 90.40 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-33 GMI_ES01_c10912_295 locus 0.00 (cM) Automated name-based View Maps
avgbs_222427 locus 2.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_222427 locus 2.90 () Automated name-based View Maps
avgbs_29207 locus 2.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_29207 locus 2.90 () Automated name-based View Maps
avgbs_80348 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_80348 locus 3.00 () Automated name-based View Maps
avgbs_203121 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_203121 locus 3.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_17b avgbs_203121 locus 89.80 () Automated name-based View Maps
GMI_GBS_31405 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_GBS_31405 locus 3.00 () Automated name-based View Maps
avgbs_85300 locus 3.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_85300 locus 3.30 () Automated name-based View Maps
avgbs_7898 locus 3.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_7898 locus 3.60 () Automated name-based View Maps
avgbs_103296 locus 3.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_103296 locus 3.60 () Automated name-based View Maps
GMI_ES01_c13403_102 locus 3.60 Oat - Avena_2013_SNP - Avena_2013_SNP_2C GMI_ES01_c13403 locus 5.37 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES01_c13403_102 locus 3.60 () Automated name-based View Maps
GMI_ES22_c1298_437 locus 3.80 Oat - Oat-2016-SxH - Oat-2016-SxH_20 GMI_ES22_c1298_437 locus 4.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES22_c1298_437 locus 3.80 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-32 GMI_ES22_c1298_437 locus 16.89 (cM) Automated name-based View Maps
GMI_ES17_c899_571 locus 3.80 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-32 GMI_ES17_c899_571 locus 15.95 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES17_c899_571 locus 3.80 () Automated name-based View Maps
GMI_ES14_c2320_26 locus 3.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES14_c2320_26 locus 3.80 () Automated name-based View Maps
GMI_DS_A3_455_100 locus 3.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_DS_A3_455_100 locus 3.80 () Automated name-based View Maps
GMI_GBS_81139 locus 3.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_GBS_81139 locus 3.80 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_33 GMI_GBS_81139 locus 7.60 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-33 GMI_GBS_81139 locus 8.01 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_21b GMI_GBS_81139 locus 22.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_32 GMI_GBS_81139 locus 9.16 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.