*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-Consensus-19
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-Consensus [ View Map Set Info ]
Map Name: Oat-2016-Consensus-19
Map Start: -18.40
Map Stop: 92.20
Features by Type:
437 locus
437 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 437.       of 18 | Next
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_37591 locus -18.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_37591 locus -18.40 () Automated name-based View Maps
avgbs_216812 locus -14.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_216812 locus -14.50 () Automated name-based View Maps
avgbs_21422 locus -12.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_21422 locus -12.40 () Automated name-based View Maps
CDO187 locus -10.50 Oat - Oat-2016-KxO - Oat-2016-KxO_28 CDO187 locus 8.40 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 CDO187 locus 91.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-12 Xcdo187 locus 15.20 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_4 cdo187 locus 94.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 CDO187 locus -10.50 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 CDO187 locus 92.00 (cM) Automated name-based View Maps
avgbs_244741 locus -6.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_244741 locus -6.40 () Automated name-based View Maps
avgbs_118159 locus -4.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_118159 locus -4.00 () Automated name-based View Maps
GMI_ES01_c1700_379 locus -3.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES01_c1700_379 locus -3.60 () Automated name-based View Maps
avgbs_59161 locus -3.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_59161 locus -3.30 () Automated name-based View Maps
GMI_ES05_c1786_478 locus -2.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES05_c1786_478 locus -2.50 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_28 GMI_ES05_c1786_478 locus 0.00 () Automated name-based View Maps
GMI_ES_LB_8613 locus 0.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_ES_LB_8613 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_LB_8613 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_ES_LB_8613 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4a GMI_ES_LB_8613 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_ES_LB_8613 locus 0.00 () Automated name-based View Maps
GMI_ES14_c78_442 locus 0.00 Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_ES14_c78_442 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4a GMI_ES14_c78_442 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES14_c78_442 locus 0.00 () Automated name-based View Maps
GMI_ES01_c14650_200 locus 0.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_ES01_c14650_200 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_ES01_c14650_200 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES01_c14650_200 locus 0.00 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-6 GMI_ES01_c14650 locus 87.00 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_ES01_c14650_200 locus 0.00 () Automated name-based View Maps
GMI_ES_CC17674_57 locus 0.00 Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-10 GMI_ES_CC17674 locus 104.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_CC17674_57 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_ES_CC17674_57 locus 0.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_ES_CC17674_57 locus 0.00 (cM) Automated name-based View Maps
GMI_ES05_c6099_323 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES05_c6099_323 locus 0.00 () Automated name-based View Maps
avgbs_1142 locus 0.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_1142 locus 0.20 () Automated name-based View Maps
GMI_DS_LB_10623 locus 0.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_DS_LB_10623 locus 0.20 () Automated name-based View Maps
avgbs_21756 locus 0.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_21756 locus 0.40 () Automated name-based View Maps
avgbs_77087 locus 0.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_77087 locus 0.40 () Automated name-based View Maps
GMI_ES22_c4252_400 locus 0.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES22_c4252_400 locus 0.40 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4a GMI_ES22_c4252_400 locus 0.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_ES22_c4252_400 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_ES22_c4252_400 locus 0.30 () Automated name-based View Maps
GMI_ES01_c11686_171 locus 0.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES01_c11686_171 locus 0.40 () Automated name-based View Maps
GMI_ES_LB_8745 locus 0.40 Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_ES_LB_8745 locus 0.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_LB_8745 locus 0.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_ES_LB_8745 locus 0.00 (cM) Automated name-based View Maps
avgbs_200046 locus 0.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_200046 locus 0.50 () Automated name-based View Maps
avgbs_97208 locus 1.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_97208 locus 1.10 () Automated name-based View Maps
GMI_DS_LB_6955 locus 3.00 Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_DS_LB_6955 locus 2.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_DS_LB_6955 locus 3.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_DS_LB_6955 locus 2.26 (cM) Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_DS_LB_6955 locus 0.00 () Automated name-based View Maps
avgbs_35088 locus 4.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 avgbs_35088 locus 4.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.