*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-Consensus-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-Consensus [ View Map Set Info ]
Map Name: Oat-2016-Consensus-4
Map Start: 0
Map Stop: 79.7
Features by Type:
519 locus
519 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 519.       of 21 | Next
Oat - Oat-2016-Consensus - Oat-2016-Consensus-4
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES05_c3073_282 locus 0 Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg04 GMI_ES05_c3073_282 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_ES05_c3073_282 locus 0 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_31 GMI_ES05_c3073_282 locus 0 () Automated name-based View Maps
Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg04 GMI_ES05_c3073_282 locus 147.7 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_23 GMI_ES05_c3073_282 locus 137.1 () Automated name-based View Maps
avgbs_87378 locus 1.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_87378 locus 1.5 () Automated name-based View Maps
avgbs_200076 locus 2.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_200076 locus 2.6 () Automated name-based View Maps
avgbs_213509 locus 3.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_213509 locus 3.1 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_23 avgbs_213509 locus 133.5 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_31 avgbs_213509 locus 1 () Automated name-based View Maps
avgbs_223319 locus 3.1 Oat - Oat-2016-PxG - Oat-2016-PxG_23 avgbs_223319 locus 133.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_223319 locus 3.1 () Automated name-based View Maps
GMI_ES15_c12108_368 locus 3.1 Oat - Oat-2016-PxG - Oat-2016-PxG_23 GMI_ES15_c12108_368 locus 133.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES15_c12108 locus 47.16 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_31 GMI_ES15_c12108_368 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_ES15_c12108_368 locus 3.1 () Automated name-based View Maps
avgbs_82133 locus 4.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_82133 locus 4.9 () Automated name-based View Maps
avgbs_75841 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_75841 locus 7.1 () Automated name-based View Maps
avgbs_214940 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_214940 locus 7.1 () Automated name-based View Maps
avgbs_214753 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_214753 locus 7.1 () Automated name-based View Maps
avgbs_214871 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_214871 locus 7.1 () Automated name-based View Maps
GMI_ES17_c8843_580 locus 7.1 Oat - Avena_2013_SNP - Avena_2013_SNP_18D GMI_ES17_c8843 locus 41.43 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_ES17_c8843_580 locus 7.1 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_16b GMI_ES17_c8843_580 locus 14.5 () Automated name-based View Maps
GMI_ES17_c6498_89 locus 7.1 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-3 GMI_ES17_c6498_89 locus 136.23 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_ES17_c6498_89 locus 7.1 () Automated name-based View Maps
Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg04 GMI_ES17_c6498_89 locus 132.7 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_31 GMI_ES17_c6498_89 locus 6.6 () Automated name-based View Maps
avgbs_225741 locus 11.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_225741 locus 11.9 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_23 avgbs_225741 locus 119.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_31 avgbs_225741 locus 5.6 () Automated name-based View Maps
avgbs_6K_11649 locus 13.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_6K_11649 locus 13.2 () Automated name-based View Maps
avgbs_6K_71132 locus 13.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_6K_71132 locus 13.2 () Automated name-based View Maps
GMI_GBS_11649 locus 13.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_GBS_11649 locus 13.2 () Automated name-based View Maps
avgbs_11214 locus 14.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_11214 locus 14.2 () Automated name-based View Maps
avgbs_81237 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_81237 locus 16.2 () Automated name-based View Maps
avgbs_215017 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_215017 locus 16.2 () Automated name-based View Maps
avgbs_12447 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_12447 locus 16.2 () Automated name-based View Maps
avgbs_12446 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_12446 locus 16.2 () Automated name-based View Maps
avgbs_117439 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_117439 locus 16.2 () Automated name-based View Maps
avgbs_94300 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 avgbs_94300 locus 16.2 () Automated name-based View Maps
GMI_ES17_c1358_233 locus 16.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 GMI_ES17_c1358_233 locus 16.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.