*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-DxE
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-DxE_2a
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-DxE [ View Map Set Info ]
Map Name: Oat-2016-DxE_2a
Map Start: 0
Map Stop: 3.5
Features by Type:
23 locus
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Oat - Oat-2016-DxE - Oat-2016-DxE_2a
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c16349_294 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c16349_294 locus 56.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c16349 locus 56.99 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES02_c16349_294 locus 22.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c16349_294 locus 56.5 () Automated name-based View Maps
avgbs_200561 locus 0.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_200561 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_200561 locus 56.5 () Automated name-based View Maps
GMI_ES15_c6130_326 locus 2.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c6130_326 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c6130_326 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c6130_326 locus 53.3 () Automated name-based View Maps
GMI_ES22_c8670_78 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c8670_78 locus 53.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c8670_78 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c8670_78 locus 56.5 () Automated name-based View Maps
GMI_ES22_c4367_376 locus 2.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c4367_376 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c4367_376 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c4367_376 locus 53.3 () Automated name-based View Maps
GMI_ES15_c713_848 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c713_848 locus 53.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c713_848 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c713_848 locus 56.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_c713 locus 56.17 () Automated name-based View Maps
GMI_ES14_c940_534 locus 2.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c940_534 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c940_534 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_c940_534 locus 40.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES14_c940_534 locus 53.3 () Automated name-based View Maps
GMI_ES14_c11471_199 locus 2.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c11471_199 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c11471_199 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES14_c11471_199 locus 53.3 () Automated name-based View Maps
GMI_ES11_c397_1001 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES11_c397_1001 locus 53.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES11_c397_1001 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES11_c397_1001 locus 56.5 () Automated name-based View Maps
GMI_ES03_c9245_234 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES03_c9245_234 locus 53.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c9245_234 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c9245_234 locus 56.5 () Automated name-based View Maps
GMI_DS_LB_8383 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_DS_LB_8383 locus 53.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_DS_LB_8383 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_DS_LB_8383 locus 56.5 () Automated name-based View Maps
GMI_ES03_c15150_160 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES03_c15150_160 locus 53.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c15150_160 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES03_c15150_160 locus 40.2 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES03_c15150_160 locus 22.9 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES03_c15150_160 locus 41.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c15150_160 locus 56.5 () Automated name-based View Maps
GMI_ES02_c12776_148 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES02_c12776_148 locus 53.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c12776_148 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c12776_148 locus 56.5 () Automated name-based View Maps
GMI_ES01_lrc22977_595 locus 2.2 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_lrc22977 locus 56.17 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES01_lrc22977_595 locus 53.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES01_lrc22977_595 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES01_lrc22977_595 locus 56.5 () Automated name-based View Maps
avgbs_45014 locus 2.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_45014 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_45014 locus 56.5 () Automated name-based View Maps
GMI_ES_CC8503_89 locus 2.2 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES_CC8503_89 locus 53.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC8503 locus 56.17 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_CC8503_89 locus 56.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_CC8503_89 locus 56.5 () Automated name-based View Maps
GMI_ES15_c7722_409 locus 3.5 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c7722_409 locus 55.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c7722_409 locus 41.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_c7722 locus 54.19 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c7722_409 locus 41.2 () Automated name-based View Maps
GMI_ES15_c900_850 locus 3.5 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_c900 locus 54.19 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c900_850 locus 41.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c900_850 locus 41.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c900_850 locus 55.4 () Automated name-based View Maps
GMI_ES22_c9677_372 locus 3.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c9677_372 locus 41.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c9677_372 locus 55.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c9677_372 locus 41.2 () Automated name-based View Maps
GMI_ES15_c19472_537 locus 3.5 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES15_c19472_537 locus 47.46 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c19472_537 locus 50.5 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES15_c19472_537 locus 56.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c19472_537 locus 50.5 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c19472_537 locus 53.9 () Automated name-based View Maps
GMI_ES02_c17786_350 locus 3.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c17786_350 locus 41.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c17786_350 locus 41.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES02_c17786_350 locus 55.4 () Automated name-based View Maps
GMI_ES02_c21402_61 locus 3.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c21402_61 locus 42.1 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES02_c21402_61 locus 54.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c21402 locus 55.83 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c21402_61 locus 42.1 () Automated name-based View Maps
avgbs_91791 locus 3.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_91791 locus 41.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_91791 locus 41.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.