*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-DxE
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-DxE_8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-DxE [ View Map Set Info ]
Map Name: Oat-2016-DxE_8
Map Start: 0.00
Map Stop: 41.90
Features by Type:
45 locus
45 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 45.       of 2 | Next
Oat - Oat-2016-DxE - Oat-2016-DxE_8
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_84041 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_84041 locus 42.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_84041 locus 42.60 () Automated name-based View Maps
avgbs_200747 locus 1.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200747 locus 47.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200747 locus 47.10 () Automated name-based View Maps
GMI_DS_CC7795_77 locus 1.00 Oat - Oat-2016-SxH - Oat-2016-SxH_27 GMI_DS_CC7795_77 locus 5.50 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_9 GMI_DS_CC7795_77 locus 26.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7 GMI_DS_CC7795_77 locus 10.53 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_CC7795_77 locus 47.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-31 GMI_DS_CC7795_77 locus 33.28 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_CC7795_77 locus 47.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_DS_CC7795_77 locus 10.00 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_DS_CC7795 locus 29.82 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_DS_CC7795_77 locus 30.20 () Automated name-based View Maps
GMI_ES_CC12751_340 locus 1.00 Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_ES_CC12751_340 locus 10.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES_CC12751_340 locus 47.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES_CC12751_340 locus 47.10 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_27 GMI_ES_CC12751_340 locus 5.50 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES_CC12751_340 locus 30.20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_9 GMI_ES_CC12751_340 locus 26.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7 GMI_ES_CC12751_340 locus 10.53 (cM) Automated name-based View Maps
GMI_ES01_c17064_407 locus 1.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7 GMI_ES01_c17064_407 locus 10.53 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES01_c17064 locus 31.68 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-31 GMI_ES01_c17064_407 locus 32.38 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_ES01_c17064_407 locus 10.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES01_c17064_407 locus 30.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_c17064_407 locus 47.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_c17064_407 locus 47.10 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_9 GMI_ES01_c17064_407 locus 26.10 () Automated name-based View Maps
avgbs_104278 locus 7.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_104278 locus 53.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_104278 locus 53.10 () Automated name-based View Maps
avgbs_101595 locus 7.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_101595 locus 53.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_101595 locus 53.10 () Automated name-based View Maps
avgbs_200542 locus 7.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200542 locus 53.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200542 locus 53.10 () Automated name-based View Maps
avgbs_3721 locus 7.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_3721 locus 53.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_3721 locus 53.10 () Automated name-based View Maps
avgbs_36908 locus 7.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_36908 locus 53.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_36908 locus 53.10 () Automated name-based View Maps
avgbs_200733 locus 7.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200733 locus 53.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200733 locus 53.10 () Automated name-based View Maps
avgbs_200869 locus 7.80 Oat - Oat-2016-OxP - Oat-2016-OxP_1 avgbs_200869 locus 36.10 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b avgbs_200869 locus 72.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200869 locus 53.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200869 locus 53.10 () Automated name-based View Maps
GMI_ES03_c12087_253 locus 10.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES03_c12087_253 locus 56.60 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_ES03_c12087_253 locus 38.80 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7 GMI_ES03_c12087_253 locus 17.24 (cM) Automated name-based View Maps
Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg09 GMI_ES03_c12087_253 locus 56.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES03_c12087_253 locus 56.60 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20a GMI_ES03_c12087_253 locus 17.30 () Automated name-based View Maps
avgbs_200842 locus 10.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200842 locus 56.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200842 locus 56.60 () Automated name-based View Maps
avgbs_93566 locus 16.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_93566 locus 63.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 avgbs_93566 locus 141.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_93566 locus 63.60 () Automated name-based View Maps
avgbs_64547 locus 16.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_64547 locus 63.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_64547 locus 63.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b avgbs_64547 locus 64.00 () Automated name-based View Maps
avgbs_120188 locus 16.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_120188 locus 63.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_120188 locus 63.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 avgbs_120188 locus 146.30 () Automated name-based View Maps
GMI_ES03_c11465_78 locus 17.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES03_c11465_78 locus 67.50 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_ES03_c11465_78 locus 48.70 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP8 GMI_ES03_c11465_78 locus 29.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES03_c11465_78 locus 67.50 () Automated name-based View Maps
GMI_ES02_c2118_202 locus 17.90 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES02_c2118 locus 46.45 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES02_c2118_202 locus 67.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES02_c2118_202 locus 67.50 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_ES02_c2118_202 locus 48.70 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP8 GMI_ES02_c2118_202 locus 29.80 () Automated name-based View Maps
avgbs_113594 locus 17.90 Oat - Oat-2016-PxG - Oat-2016-PxG_6b avgbs_113594 locus 61.20 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 avgbs_113594 locus 47.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_113594 locus 66.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_113594 locus 66.30 () Automated name-based View Maps
GMI_ES05_c1798_423 locus 18.70 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-37 GMI_ES05_c1798_423 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES05_c1798_423 locus 68.30 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES05_c1798_423 locus 57.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES05_c1798_423 locus 68.30 () Automated name-based View Maps
avgbs_20620 locus 18.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_20620 locus 68.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_20620 locus 68.30 () Automated name-based View Maps
GMI_ES17_c327_972 locus 20.30 Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES17_c327 locus 48.25 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES17_c327_972 locus 69.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_ES17_c327_972 locus 52.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES17_c327_972 locus 69.70 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES17_c327_972 locus 74.00 () Automated name-based View Maps
GMI_ES03_c227_1376 locus 20.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES03_c227_1376 locus 69.70 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6b GMI_ES03_c227_1376 locus 57.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES03_c227_1376 locus 69.70 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES03_c227_1376 locus 74.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 GMI_ES03_c227_1376 locus 52.00 () Automated name-based View Maps
avgbs_200580 locus 20.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200580 locus 69.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200580 locus 69.70 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.