*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-HxZ_MP2b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-HxZ [ View Map Set Info ]
Map Name: Oat-2016-HxZ_MP2b
Map Start: 0
Map Stop: 114.5
Features by Type:
124 locus
124 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 124.       of 5 | Next
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_24553 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_24553 locus 142 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_24553 locus 142 () Automated name-based View Maps
avgbs_8278 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_8278 locus 142 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_8278 locus 142 () Automated name-based View Maps
avgbs_121727 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_121727 locus 142 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_121727 locus 142 () Automated name-based View Maps
avgbs_200042 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_200042 locus 140.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_200042 locus 140.5 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_16 avgbs_200042 locus 48.2 () Automated name-based View Maps
avgbs_216074 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_216074 locus 142 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_216074 locus 142 () Automated name-based View Maps
GMI_ES22_c7981_618 locus 0 Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_ES22_c7981_618 locus 181 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_ES22_c7981_618 locus 2.7 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES22_c7981_618 locus 72.3 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES22_c7981_618 locus 8.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES22_c7981_618 locus 132.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES22_c7981_618 locus 70.39 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES22_c7981_618 locus 132.4 () Automated name-based View Maps
avgbs_8279 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_8279 locus 142 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_8279 locus 142 () Automated name-based View Maps
GMI_ES02_c3044_164 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c3044_164 locus 132.9 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_ES02_c3044_164 locus 2.4 () Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xOt_Mrg08 GMI_ES02_c3044_164 locus 19.9 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c3044_164 locus 132.9 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES02_c3044_164 locus 0 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES02_c3044 locus 109.61 () Automated name-based View Maps
avgbs_102650 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_102650 locus 129.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_102650 locus 129.6 () Automated name-based View Maps
GMI_ES01_c11874_130 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c11874_130 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c11874_130 locus 129.6 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES01_c11874 locus 106.84 () Automated name-based View Maps
GMI_ES03_c2612_410 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES03_c2612_410 locus 122.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES03_c2612_410 locus 64.1 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES03_c2612_410 locus 19.8 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES03_c2612_410 locus 63.24 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_15 GMI_ES03_c2612_410 locus 29.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES03_c2612_410 locus 122.2 () Automated name-based View Maps
avgbs_214786 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_214786 locus 129.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_214786 locus 129.6 () Automated name-based View Maps
GMI_DS_LB_1354 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_LB_1354 locus 129.6 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-KaszxPc45_1 GMI_DS_LB_1354 locus 53.8 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_DS_LB_1354 locus 4.8 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_DS_LB_1354 locus 16.1 () Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-3019xMor_1 GMI_DS_LB_1354 locus 36.7 (cM) Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-3019xMort_1 GMI_DS_LB_1354 locus 34.3 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_LB_1354 locus 129.6 () Automated name-based View Maps
GMI_ES15_c5554_377 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c5554_377 locus 127 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_ES15_c5554_377 locus 5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c5554_377 locus 127 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES15_c5554_377 locus 88.9 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES15_c5554_377 locus 67.9 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES15_c5554 locus 106.08 () Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xOt_Mrg08 GMI_ES15_c5554_377 locus 18.3 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES15_c5554_377 locus 16.1 () Automated name-based View Maps
GMI_ES05_lrc16479_180 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES05_lrc16479_180 locus 122.2 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_15 GMI_ES05_lrc16479_180 locus 29.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES05_lrc16479_180 locus 122.2 () Automated name-based View Maps
avgbs_213780 locus 4.4 Oat - Oat-2016-OxT - Oat-2016-OxT_16 avgbs_213780 locus 56.4 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-3019xMort_1 avgbs_213780 locus 34.3 (cM) Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-3019xMor_1 avgbs_213780 locus 36.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_213780 locus 123.6 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-KaszxPc45_1 avgbs_213780 locus 53.8 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_213780 locus 123.6 () Automated name-based View Maps
GMI_ES15_c5831_418 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c5831_418 locus 126.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_15 GMI_ES15_c5831_418 locus 28.2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_ES15_c5831_418 locus 6.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES15_c5831_418 locus 2.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c5831_418 locus 126.3 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_ES15_c5831_418 locus 69.2 () Automated name-based View Maps
avgbs_108990 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_108990 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_108990 locus 129.6 () Automated name-based View Maps
GMI_ES17_c1365_216 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES17_c1365_216 locus 129.6 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES17_c1365 locus 106.66 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES17_c1365_216 locus 129.6 () Automated name-based View Maps
GMI_ES02_c4736_979 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c4736_979 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c4736_979 locus 129.6 () Automated name-based View Maps
avgbs_3004 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_3004 locus 129.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_3004 locus 129.6 () Automated name-based View Maps
avgbs_41368 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_41368 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_41368 locus 129.6 () Automated name-based View Maps
GMI_ES02_c38462_575 locus 4.4 Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES02_c38462_575 locus 4.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c38462_575 locus 125.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_15 GMI_ES02_c38462_575 locus 26.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c38462_575 locus 125.3 () Automated name-based View Maps
avgbs_108992 locus 4.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_108992 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_108992 locus 129.6 () Automated name-based View Maps
avgbs_108991 locus 4.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_108991 locus 129.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_108991 locus 129.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.