*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-HxZ_SW10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-HxZ [ View Map Set Info ]
Map Name: Oat-2016-HxZ_SW10
Map Start: 0
Map Stop: 38.4
Features by Type:
21 locus
21 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 21 of 21.
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW10
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_35556 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_35556 locus 82.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_35556 locus 82.4 () Automated name-based View Maps
GMI_ES_CC15368_155 locus 2.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_CC15368_155 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_CC15368_155 locus 85.2 () Automated name-based View Maps
avgbs_15993 locus 2.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_15993 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_15993 locus 85.2 () Automated name-based View Maps
GMI_GBS_88885 locus 2.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_88885 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_88885 locus 85.2 () Automated name-based View Maps
GMI_ES17_c9448_286 locus 2.1 Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES17_c9448_286 locus 38.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c9448_286 locus 85.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c9448 locus 21.45 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES17_c9448_286 locus 9.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c9448_286 locus 85.2 () Automated name-based View Maps
GMI_DS_LB_5489 locus 2.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_5489 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_5489 locus 85.2 () Automated name-based View Maps
GMI_DS_LB_8097 locus 2.1 Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_DS_LB_8097 locus 9.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_8097 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_8097 locus 87.3 () Automated name-based View Maps
GMI_ES17_c4223_141 locus 2.1 Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c4223 locus 20.65 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c4223_141 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c4223_141 locus 85.2 () Automated name-based View Maps
avgbs_15992 locus 2.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_15992 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_15992 locus 85.2 () Automated name-based View Maps
GMI_ES17_c1618_519 locus 4.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c1618_519 locus 87.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c1618 locus 22.11 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c1618_519 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES17_c1618_519 locus 9.9 () Automated name-based View Maps
GMI_ES17_c7319_557 locus 4.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c7319_557 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES17_c7319_557 locus 9.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c7319_557 locus 87.3 () Automated name-based View Maps
GMI_ES01_c11420_274 locus 4.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c11420_274 locus 73.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES01_c11420 locus 21.88 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c11420_274 locus 73.3 () Automated name-based View Maps
GMI_ES02_c30422_102 locus 10.8 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES02_c30422_102 locus 66 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES02_c30422_102 locus 66 () Automated name-based View Maps
avgbs_204881 locus 12.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_204881 locus 68.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_204881 locus 68.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 avgbs_204881 locus 57.8 () Automated name-based View Maps
avgbs_108317 locus 12.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_108317 locus 68.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_108317 locus 68.2 () Automated name-based View Maps
avgbs_62563 locus 12.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_62563 locus 68.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_62563 locus 68.2 () Automated name-based View Maps
GMI_ES14_c1182_796 locus 12.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c1182_796 locus 68.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES14_c1182_796 locus 22.98 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c1182_796 locus 68.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_ES14_c1182_796 locus 57.8 () Automated name-based View Maps
GMI_ES17_c13611_215 locus 22.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c13611_215 locus 85.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c13611_215 locus 85.9 () Automated name-based View Maps
GMI_DS_oPt-14877_117 locus 22.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_oPt-14877_117 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_oPt-14877_117 locus 87.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_DS_oPt-14877 locus 22.34 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_DS_oPt-14877_117 locus 31 (cM) Automated name-based View Maps
GMI_GBS_32754 locus 22.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_32754 locus 51.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27a GMI_GBS_32754 locus 19 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_GBS_32754 locus 50.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_32754 locus 51.3 () Automated name-based View Maps
GMI_ES01_c16132_303 locus 38.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c16132_303 locus 70.8 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES01_c16132 locus 40.85 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c16132_303 locus 70.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.