*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-HxZ_ksh21
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-HxZ [ View Map Set Info ]
Map Name: Oat-2016-HxZ_ksh21
Map Start: 0
Map Stop: 6.1
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh21
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES05_c26034_141 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES05_c26034_141 locus 101.7 () Automated name-based View Maps
GMI_ES02_c3577_672 locus 1 Oat - Oat-2016-DxE - Oat-2016-DxE_19 GMI_ES02_c3577_672 locus 24.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-17 GMI_ES02_c3577_672 locus 46.26 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_24 GMI_ES02_c3577_672 locus 46.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_17A-7C GMI_ES02_c3577 locus 3.01 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
GMI_ES01_c15628_381 locus 1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_17A-7C GMI_ES01_c15628 locus 2.29 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_24 GMI_ES01_c15628_381 locus 44.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
avgbs_215156 locus 1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_24 avgbs_215156 locus 44.6 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_19 avgbs_215156 locus 110.6 () Automated name-based View Maps
GMI_ES14_c2441_215 locus 5.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_31 GMI_ES14_c2441_215 locus 3.24 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-20 GMI_ES14_c2441_215 locus 43 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-17 GMI_ES14_c2441_215 locus 51.17 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_24 GMI_ES14_c2441_215 locus 52.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_9 GMI_ES14_c2441_215 locus 3.2 () Automated name-based View Maps
avgbs_27228 locus 6.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_27228 locus 112.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_27228 locus 112.7 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_19 avgbs_27228 locus 104.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_27228 locus 112.7 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_15b avgbs_27228 locus 171 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_27228 locus 112.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_27228 locus 112.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_27228 locus 112.7 () Automated name-based View Maps
avgbs_213309 locus 6.1 Oat - Oat-2016-OxP - Oat-2016-OxP_19 avgbs_213309 locus 104.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_213309 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_213309 locus 110.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_213309 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_213309 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_213309 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_213309 locus 110.2 () Automated name-based View Maps
avgbs_203553 locus 6.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_203553 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_203553 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_203553 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_203553 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_203553 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_203553 locus 117.4 () Automated name-based View Maps
GMI_ES03_c20076_383 locus 6.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES03_c20076_383 locus 110.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.