*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-HxZ
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-HxZ_ss4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-HxZ [ View Map Set Info ]
Map Name: Oat-2016-HxZ_ss4
Map Start: 0.00
Map Stop: 90.10
Features by Type:
75 locus
75 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 75.       of 3 | Next
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES14_c10785_407 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES14_c10785_407 locus 108.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_20 GMI_ES14_c10785_407 locus 74.70 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES14_c10785_407 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
GMI_ES14_c10785_566 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_20 GMI_ES14_c10785_566 locus 74.70 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES14_c10785_566 locus 108.90 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
avgbs_200851 locus 6.10 Oat - Oat-2016-PxG - Oat-2016-PxG_6a avgbs_200851 locus 10.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_200851 locus 9.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_200851 locus 9.60 () Automated name-based View Maps
GMI_ES17_c11370_658 locus 8.50 Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES17_c11370_658 locus 49.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c11370_658 locus 21.10 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_22 GMI_ES17_c11370_658 locus 3.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c11370_658 locus 21.10 () Automated name-based View Maps
avgbs_213381 locus 8.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_213381 locus 21.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_213381 locus 21.10 () Automated name-based View Maps
avgbs_14251 locus 8.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_14251 locus 21.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_14251 locus 21.10 () Automated name-based View Maps
avgbs_201544 locus 12.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_201544 locus 27.40 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a avgbs_201544 locus 27.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_201544 locus 27.40 () Automated name-based View Maps
avgbs_203678 locus 21.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_203678 locus 34.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_203678 locus 34.70 () Automated name-based View Maps
avgbs_52341 locus 21.10 Oat - Oat-2016-OxT - Oat-2016-OxT_3 avgbs_52341 locus 33.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_52341 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_52341 locus 34.70 () Automated name-based View Maps
GMI_ES22_c567_627 locus 21.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES22_c567_627 locus 31.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES22_c567_627 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES22_c567_627 locus 34.80 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES22_c567_627 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES22_c567_627 locus 64.20 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c567_627 locus 57.50 () Automated name-based View Maps
GMI_ES15_c9667_138 locus 21.10 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c9667_138 locus 57.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9667_138 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES15_c9667_138 locus 31.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES15_c9667_138 locus 64.20 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c9667_138 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES15_c9667_138 locus 34.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
GMI_ES02_c15898_126 locus 31.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c15898_126 locus 42.40 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c15898 locus 43.84 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES02_c15898_126 locus 32.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c15898_126 locus 3.29 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES02_c15898_126 locus 46.23 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES02_c15898_126 locus 3.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c15898_126 locus 42.40 () Automated name-based View Maps
avgbs_20974 locus 35.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_20974 locus 44.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_20974 locus 44.00 () Automated name-based View Maps
avgbs_202522 locus 35.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_202522 locus 44.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_202522 locus 44.00 () Automated name-based View Maps
GMI_ES03_c1529_143 locus 35.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c1529_143 locus 44.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c1529_143 locus 44.00 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 GMI_ES03_c1529_143 locus 32.60 () Automated name-based View Maps
avgbs_107053 locus 39.00 Oat - Oat-2016-OxT - Oat-2016-OxT_3 avgbs_107053 locus 68.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_107053 locus 55.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_107053 locus 55.60 () Automated name-based View Maps
avgbs_205352 locus 39.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_205352 locus 55.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_205352 locus 55.60 () Automated name-based View Maps
avgbs_121147 locus 39.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_121147 locus 55.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a avgbs_121147 locus 45.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_121147 locus 55.60 () Automated name-based View Maps
GMI_ES14_c940_534 locus 40.20 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES14_c940_534 locus 53.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c940_534 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c940_534 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES14_c940_534 locus 2.20 () Automated name-based View Maps
avgbs_82077 locus 40.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_82077 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_82077 locus 56.50 () Automated name-based View Maps
GMI_ES03_lrc9794_213 locus 40.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_lrc9794_213 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_lrc9794_213 locus 56.50 () Automated name-based View Maps
avgbs_82078 locus 40.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_82078 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_82078 locus 56.50 () Automated name-based View Maps
GMI_ES03_c15150_160 locus 40.20 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES03_c15150_160 locus 41.25 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES03_c15150_160 locus 22.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES03_c15150_160 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES03_c15150_160 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES03_c15150_160 locus 53.30 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES03_c15150_160 locus 2.20 () Automated name-based View Maps
GMI_DS_LB_7739 locus 40.20 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_DS_LB_7739 locus 68.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_DS_LB_7739 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_DS_LB_7739 locus 56.50 () Automated name-based View Maps
GMI_ES_CC11828_146 locus 40.20 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES_CC11828_146 locus 68.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_CC11828_146 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_CC11828_146 locus 56.50 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.