*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-IL5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-IL5_AM19
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-IL5 [ View Map Set Info ]
Map Name: Oat-2016-IL5_AM19
Map Start: 0
Map Stop: 3.9
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM19
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_GBS_76935 locus 0 Oat - Oat-2016-OxT - Oat-2016-OxT_14a GMI_GBS_76935 locus 0 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_GBS_76935 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_GBS_76935 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_GBS_76935 locus 6.45 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_GBS_76935 locus 13.09 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_76935 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_GBS_76935 locus 21.52 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_GBS_76935 locus 6.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_76935 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_GBS_76935 locus 2.1 () Automated name-based View Maps
GMI_ES01_c11978_130 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES01_c11978_130 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14a GMI_ES01_c11978_130 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES01_c11978_130 locus 0 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES01_c11978_130 locus 6.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES01_c11978_130 locus 95.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES01_c11978_130 locus 6.45 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_ES01_c11978_130 locus 21.55 (cM) Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES01_c11978_130 locus 0 () Automated name-based View Maps
GMI_DS_LB_6427 locus 0 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_DS_LB_6427 locus 6.45 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_DS_LB_6427 locus 6.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_DS_LB_6427 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_DS_LB_6427 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_DS_LB_6427 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_DS_LB_6427 locus 21.52 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14a GMI_DS_LB_6427 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_DS_LB_6427 locus 0 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_DS_LB_6427 locus 2.1 () Automated name-based View Maps
GMI_GBS_96887 locus 0 Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_GBS_96887 locus 2.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_96887 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_GBS_96887 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_GBS_96887 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_GBS_96887 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_96887 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_GBS_96887 locus 20.31 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_GBS_96887 locus 6.1 () Automated name-based View Maps
GMI_ES03_c7991_360 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES03_c7991_360 locus 95.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES03_c7991_360 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_ES03_c7991_360 locus 2.1 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES03_c7991_360 locus 0 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_ES03_c7991_360 locus 16.44 (cM) Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES03_c7991_360 locus 0 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES03_c7991_360 locus 6.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES03_c7991_360 locus 95.3 () Automated name-based View Maps
GMI_DS_LB_3563 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_DS_LB_3563 locus 95.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_DS_LB_3563 locus 95.3 () Automated name-based View Maps
GMI_ES_LB_11153 locus 0.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES_LB_11153 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_ES_LB_11153 locus 4.6 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES_LB_11153 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 GMI_ES_LB_11153 locus 20.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES_LB_11153 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP11 GMI_ES_LB_11153 locus 2 () Automated name-based View Maps
GMI_ES15_c1555_392 locus 0.6 Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_ES15_c1555_392 locus 4.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES15_c1555_392 locus 95.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES15_c1555_392 locus 95.3 () Automated name-based View Maps
GMI_GBS_112943 locus 0.6 Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_GBS_112943 locus 4.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_112943 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_112943 locus 95.3 () Automated name-based View Maps
GMI_ES15_c8662_158 locus 0.6 Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_ES15_c8662_158 locus 4.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES15_c8662_158 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES15_c8662_158 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES15_c8662_158 locus 0 () Automated name-based View Maps
GMI_GBS_70938 locus 1.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_70938 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_70938 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_GBS_70938 locus 9.98 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_GBS_70938 locus 6.1 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_GBS_70938 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_GBS_70938 locus 6.13 (cM) Automated name-based View Maps
GMI_ES02_c38081_363 locus 1.5 Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-2 GMI_ES02_c38081 locus 100.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES02_c38081_363 locus 95.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES02_c38081_363 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES02_c38081_363 locus 6.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES02_c38081_363 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES02_c38081_363 locus 0 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_ES02_c38081_363 locus 2.1 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES02_c38081_363 locus 0 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_ES02_c38081_363 locus 19.42 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_ES02_c38081_363 locus 2.8 () Automated name-based View Maps
GMI_ES14_c8305_519 locus 2.1 Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES14_c8305_519 locus 0 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14a GMI_ES14_c8305_519 locus 11.8 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_ES14_c8305_519 locus 22.25 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES14_c8305_519 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_ES14_c8305_519 locus 2.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c8305_519 locus 90.8 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES14_c8305_519 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c8305_519 locus 90.8 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES14_c8305_519 locus 6.1 () Automated name-based View Maps
GMI_ES14_c3870_450 locus 2.1 Oat - Oat-2016-SxH - Oat-2016-SxH_23 GMI_ES14_c3870_450 locus 0 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_10 GMI_ES14_c3870_450 locus 0 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_ES14_c3870_450 locus 2.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES14_c3870_450 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES14_c3870_450 locus 6.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c3870_450 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_ES14_c3870_450 locus 9.08 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c3870_450 locus 95.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_ES14_c3870_450 locus 18.45 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES14_c3870_450 locus 0 () Automated name-based View Maps
GMI_ES05_c13617_330 locus 2.1 Oat - Oat-2016-PxG - Oat-2016-PxG_32 GMI_ES05_c13617_330 locus 0 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_11 GMI_ES05_c13617_330 locus 2.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES05_c13617_330 locus 6.13 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES05_c13617_330 locus 95.3 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES05_c13617_330 locus 6.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_ES05_c13617_330 locus 33.39 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES05_c13617_330 locus 95.3 () Automated name-based View Maps
GMI_ES03_c695_117 locus 3 Oat - Oat-2016-IL4 - Oat-2016-IL4_14 GMI_ES03_c695_117 locus 1.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-15 GMI_ES03_c695_117 locus 14.46 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES03_c695_117 locus 85.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES03_c695_117 locus 85.9 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-23 GMI_ES03_c695_117 locus 0 (cM) Automated name-based View Maps
GMI_ES11_c2305_1071 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES11_c2305_1071 locus 79.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES11_c2305_1071 locus 79.5 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_23 GMI_ES11_c2305_1071 locus 2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_28 GMI_ES11_c2305_1071 locus 2.27 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.