*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-IL5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-IL5_AM20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-IL5 [ View Map Set Info ]
Map Name: Oat-2016-IL5_AM20
Map Start: 0
Map Stop: 12
Features by Type:
29 locus
29 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 29.       of 2 | Next
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c38960_346 locus 0 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES02_c38960_346 locus 56.48 (cM) Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-21 GMI_ES02_c38960 locus 23.18 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES02_c38960_346 locus 63.4 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES02_c38960_346 locus 52 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c38960_346 locus 174.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c38960_346 locus 174.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES02_c38960_346 locus 6.7 () Automated name-based View Maps
GMI_ES22_c7747_621 locus 0 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-35 GMI_ES22_c7747_621 locus 19.27 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES22_c7747_621 locus 46.72 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES22_c7747_621 locus 174.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES22_c7747_621 locus 174.7 () Automated name-based View Maps
GMI_GBS_31651 locus 1.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_31651 locus 177.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_31651 locus 177.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_GBS_31651 locus 185 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_GBS_31651 locus 3.9 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_GBS_31651 locus 59.5 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_GBS_31651 locus 54.8 () Automated name-based View Maps
GMI_ES03_c5121_409 locus 2.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES03_c5121_409 locus 172 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES03_c5121_409 locus 172 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES03_c5121_409 locus 182.8 () Automated name-based View Maps
GMI_GBS_28982 locus 2.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_28982 locus 172 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_28982 locus 172 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_GBS_28982 locus 182.8 () Automated name-based View Maps
GMI_ES05_c14456_70 locus 2.7 Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES05_c14456_70 locus 182.8 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES05_c14456_70 locus 45.53 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c14456_70 locus 173 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c14456_70 locus 173 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES05_c14456_70 locus 46.9 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES05_c14456_70 locus 6.7 () Automated name-based View Maps
GMI_DS_LB_7758 locus 2.7 Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_DS_LB_7758 locus 44.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_DS_LB_7758 locus 172 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_DS_LB_7758 locus 6.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_DS_LB_7758 locus 172 () Automated name-based View Maps
GMI_ES01_c13025_433 locus 2.7 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c13025_433 locus 54.37 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES01_c13025_433 locus 182.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c13025_433 locus 172 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c13025_433 locus 172 () Automated name-based View Maps
GMI_ES01_c21179_152 locus 2.7 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c21179_152 locus 46.12 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c21179_152 locus 172 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES01_c21179_152 locus 182.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c21179_152 locus 172 () Automated name-based View Maps
GMI_ES01_c13820_382 locus 2.7 Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES01_c13820_382 locus 182.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c13820_382 locus 172 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c13820 locus 29.61 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c13820_382 locus 172 () Automated name-based View Maps
GMI_ES22_c3063_386 locus 4.6 Oat - Oat-2016-IL4 - Oat-2016-IL4_2 GMI_ES22_c3063_386 locus 17.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES22_c3063_386 locus 158.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES22_c3063_386 locus 37.66 (cM) Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_9 GMI_ES22_c3063_386 locus 14 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES22_c3063_386 locus 158.4 () Automated name-based View Maps
GMI_GBS_99493 locus 8.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_99493 locus 148.2 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_GBS_99493 locus 135.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_GBS_99493 locus 31.06 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_GBS_99493 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_99493 locus 148.2 () Automated name-based View Maps
GMI_ES15_c16077_340 locus 8.7 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES15_c16077_340 locus 27.42 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES15_c16077_340 locus 0.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES15_c16077_340 locus 128.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES15_c16077_340 locus 146 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES15_c16077_340 locus 88 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES15_c16077_340 locus 146 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES15_c16077_340 locus 0 () Automated name-based View Maps
GMI_ES22_lrc17882_62 locus 8.7 Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES22_lrc17882_62 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES22_lrc17882_62 locus 146 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES22_lrc17882_62 locus 22.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES22_lrc17882_62 locus 146 () Automated name-based View Maps
GMI_ES05_c9405_387 locus 8.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c9405_387 locus 146 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES05_c9405_387 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c9405_387 locus 146 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES05_c9405_387 locus 0.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES05_c9405_387 locus 128.5 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES05_c9405_387 locus 22.4 () Automated name-based View Maps
GMI_DS_LB_6971 locus 8.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_DS_LB_6971 locus 146 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_DS_LB_6971 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_DS_LB_6971 locus 22.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_DS_LB_6971 locus 128.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_DS_LB_6971 locus 146 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_9 GMI_DS_LB_6971 locus 8 () Automated name-based View Maps
GMI_ES17_c780_489 locus 8.7 Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES17_c780_489 locus 0.4 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES17_c780_489 locus 22.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES17_c780_489 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c780_489 locus 146 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES17_c780_489 locus 27.42 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c780_489 locus 146 () Automated name-based View Maps
GMI_ES17_c5590_702 locus 8.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c5590_702 locus 147.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES17_c5590_702 locus 0 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES17_c5590_702 locus 128.5 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c5590 locus 24.83 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c5590_702 locus 147.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_9 GMI_ES17_c5590_702 locus 11 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES17_c5590_702 locus 22.4 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES17_c5590_702 locus 0.4 () Automated name-based View Maps
GMI_ES22_c3430_336 locus 8.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES22_c3430_336 locus 145.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES22_c3430_336 locus 29.22 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES22_c3430_336 locus 145.3 () Automated name-based View Maps
GMI_ES15_lrc19562_699 locus 8.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES15_lrc19562_699 locus 145.3 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_lrc19562 locus 23.57 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES15_lrc19562_699 locus 145.3 () Automated name-based View Maps
GMI_ES01_c6451_522 locus 8.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c6451_522 locus 145.3 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES01_c6451_522 locus 19.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c6451_522 locus 145.3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c6451_522 locus 28.98 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES01_c6451_522 locus 128.5 () Automated name-based View Maps
GMI_ES03_c2344_498 locus 8.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES03_c2344_498 locus 144.1 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES03_c2344_498 locus 19.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES03_c2344_498 locus 125.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES03_c2344_498 locus 144.1 () Automated name-based View Maps
GMI_ES02_c24237_492 locus 8.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c24237_492 locus 145.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c24237_492 locus 145.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES02_c24237_492 locus 0 () Automated name-based View Maps
GMI_ES02_c14677_456 locus 8.9 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES02_c14677 locus 24.64 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c14677_456 locus 145.3 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES02_c14677_456 locus 0.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES02_c14677_456 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c14677_456 locus 145.3 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES02_c14677_456 locus 128.5 () Automated name-based View Maps
GMI_ES14_c3206_182 locus 10.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES14_c3206_182 locus 143.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES14_c3206_182 locus 143.6 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES14_c3206_182 locus 85.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.