*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-IL5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-IL5_SC19
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-IL5 [ View Map Set Info ]
Map Name: Oat-2016-IL5_SC19
Map Start: 0
Map Stop: 36.6
Features by Type:
16 locus
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC19
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES03_c9927_89 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES03_c9927_89 locus 78.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES03_c9927_89 locus 78.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES03_c9927_89 locus 25.9 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_7 GMI_ES03_c9927_89 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES03_c9927_89 locus 25.31 (cM) Automated name-based View Maps
GMI_GBS_14335 locus 1.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_GBS_14335 locus 7.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_GBS_14335 locus 7.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_8 GMI_GBS_14335 locus 55 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_GBS_14335 locus 45 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_GBS_14335 locus 107.5 () Automated name-based View Maps
GMI_ES01_c26749_466 locus 1.2 Oat - Oat-2019-CrownRust - Oat-2019-KaszxPc45_1 GMI_ES01_c26749_466 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_ES01_c26749_466 locus 107.5 () Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-WeavxKame_1 GMI_ES01_c26749_466 locus 18.1 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES01_c26749_466 locus 24.36 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-12 GMI_ES01_c26749_466 locus 26.53 (cM) Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-WeavxKame_1 GMI_ES01_c26749_466 locus 18.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES01_c26749_466 locus 7.3 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES01_c26749_466 locus 80.6 () Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-9001x3060_1 GMI_ES01_c26749_466 locus 16.2 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES01_c26749_466 locus 7.3 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES01_c26749_466 locus 45 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-26 GMI_ES01_c26749_466 locus 14.36 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_8 GMI_ES01_c26749_466 locus 55 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES01_c26749 locus 64.2 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES01_c26749_466 locus 25 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-9001x3060_1 GMI_ES01_c26749_466 locus 13.4 (cM) Automated name-based View Maps
GMI_ES17_c19330_272 locus 7.1 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES17_c19330_272 locus 47.7 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES17_c19330_272 locus 54 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES17_c19330_272 locus 89.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES17_c19330_272 locus 70.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES17_c19330_272 locus 71.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES17_c19330_272 locus 17.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-26 GMI_ES17_c19330_272 locus 20.76 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES17_c19330_272 locus 70.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES17_c19330_272 locus 16.52 (cM) Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xPc50_Mrg08 GMI_ES17_c19330_272 locus 55.6 (cM) Automated name-based View Maps
GMI_ES15_c5432_126 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c5432_126 locus 70.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES15_c5432_126 locus 17.15 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c5432_126 locus 70.7 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES15_c5432_126 locus 89.3 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES15_c5432_126 locus 54 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES15_c5432_126 locus 17.7 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES15_c5432_126 locus 71.9 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES15_c5432_126 locus 35.9 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES15_c5432_126 locus 47.7 () Automated name-based View Maps
GMI_ES15_c12065_114 locus 7.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c12065_114 locus 70.4 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES15_c12065_114 locus 17.4 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES15_c12065_114 locus 71.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c12065_114 locus 70.4 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES15_c12065_114 locus 35.9 () Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xPc50_Mrg08 GMI_ES15_c12065_114 locus 55.6 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_13 GMI_ES15_c12065_114 locus 89.3 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES15_c12065_114 locus 54 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES15_c12065_114 locus 47.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES15_c12065_114 locus 16.83 (cM) Automated name-based View Maps
GMI_ES22_c18790_89 locus 11.3 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES22_c18790_89 locus 34.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES22_c18790_89 locus 64.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES22_c18790_89 locus 64.5 () Automated name-based View Maps
GMI_ES15_c2518_589 locus 11.6 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES15_c2518_589 locus 34.3 () Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xPc50_Mrg08 GMI_ES15_c2518_589 locus 60.1 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c2518_589 locus 62.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c2518_589 locus 62.4 () Automated name-based View Maps
GMI_DS_LB_6430 locus 11.6 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-26 GMI_DS_LB_6430 locus 43.65 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_LB_6430 locus 62.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_LB_6430 locus 62.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_DS_LB_6430 locus 34.3 () Automated name-based View Maps
GMI_ES17_c8098_832 locus 11.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES17_c8098_832 locus 64.3 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-12 GMI_ES17_c8098_832 locus 44.35 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES17_c8098_832 locus 64.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES17_c8098_832 locus 35.6 () Automated name-based View Maps
GMI_GBS_60431 locus 11.8 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_GBS_60431 locus 34.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_GBS_60431 locus 62.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_GBS_60431 locus 62.3 () Automated name-based View Maps
GMI_ES02_c15228_655 locus 12.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c15228_655 locus 61.9 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_ES02_c15228_655 locus 84 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c15228_655 locus 61.9 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES02_c15228_655 locus 34.3 () Automated name-based View Maps
GMI_ES02_c13596_178 locus 14.9 Oat - Oat-2015-CrownRust - Oat-2015-9001x3060_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-WeavxKame_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES02_c13596 locus 51.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c13596_178 locus 59.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES02_c13596_178 locus 81.8 () Automated name-based View Maps
Oat - Oat-2015-CrownRust - Oat-2015-3019xMor_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-MorgxPc45_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-9001x3060_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES02_c13596_178 locus 71.9 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-3019xMort_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c13596_178 locus 59.2 () Automated name-based View Maps
Oat - Oat-2019-CrownRust - Oat-2019-WeavxKame_1 GMI_ES02_c13596_178 locus 0 (cM) Automated name-based View Maps
GMI_ES_CC7433_103 locus 22.8 Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_ES_CC7433_103 locus 46.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES_CC7433_103 locus 46.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES_CC7433_103 locus 46.5 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES_CC7433_103 locus 41.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES_CC7433 locus 43.87 () Automated name-based View Maps
GMI_GBS_2425 locus 32.8 Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_GBS_2425 locus 51.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_GBS_2425 locus 39.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_GBS_2425 locus 39.2 () Automated name-based View Maps
GMI_ES01_c5395_117 locus 36.6 Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-4 GMI_ES01_c5395 locus 25.92 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_18 GMI_ES01_c5395_117 locus 32.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c5395_117 locus 35.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c5395_117 locus 35.7 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES01_c5395_117 locus 56 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.