*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-IL5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-IL5_SS13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-IL5 [ View Map Set Info ]
Map Name: Oat-2016-IL5_SS13
Map Start: 0.00
Map Stop: 70.10
Features by Type:
46 locus
46 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 46.       of 2 | Next
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES14_c3401_306 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 GMI_ES14_c3401_306 locus 88.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_15a GMI_ES14_c3401_306 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
GMI_ES05_c8943_380 locus 5.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_15a GMI_ES05_c8943_380 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_10b GMI_ES05_c8943_380 locus 0.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg11 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES05_c8943_380 locus 3.70 () Automated name-based View Maps
GMI_ES17_c4700_516 locus 9.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c4700_516 locus 152.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES17_c4700_516 locus 176.20 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES17_c4700_516 locus 67.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES17_c4700_516 locus 67.63 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c4700_516 locus 152.10 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_21 GMI_ES17_c4700_516 locus 31.50 () Automated name-based View Maps
GMI_ES22_c10159_379 locus 11.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c10159_379 locus 148.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c10159_379 locus 148.90 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES22_c10159_379 locus 172.00 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_10b GMI_ES22_c10159_379 locus 2.20 () Automated name-based View Maps
GMI_ES_LB_11704 locus 11.10 Oat - Oat-2016-IL4 - Oat-2016-IL4_10b GMI_ES_LB_11704 locus 2.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES_LB_11704 locus 148.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES_LB_11704 locus 148.90 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES_LB_11704 locus 172.00 () Automated name-based View Maps
GMI_ES01_c9472_428 locus 12.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES01_c9472_428 locus 147.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES01_c9472_428 locus 147.60 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_10b GMI_ES01_c9472_428 locus 2.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES01_c9472_428 locus 172.00 () Automated name-based View Maps
GMI_GBS_21750 locus 13.80 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_GBS_21750 locus 158.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_GBS_21750 locus 135.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_GBS_21750 locus 135.50 () Automated name-based View Maps
GMI_ES14_lrc18713_286 locus 27.50 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES14_lrc18713_286 locus 39.72 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES14_lrc18713_286 locus 38.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_lrc18713_286 locus 117.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_lrc18713_286 locus 117.40 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_lrc18713_286 locus 63.20 () Automated name-based View Maps
GMI_ES05_c9640_317 locus 28.10 Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES05_c9640_317 locus 34.10 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES05_c9640_317 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES05_c9640_317 locus 134.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES05_c9640_317 locus 114.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES05_c9640_317 locus 114.70 () Automated name-based View Maps
GMI_ES15_c14992_307 locus 28.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES15_c14992_307 locus 63.20 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c14992_307 locus 34.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c14992_307 locus 36.07 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c14992_307 locus 111.30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES15_c14992_307 locus 131.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c14992_307 locus 111.30 () Automated name-based View Maps
GMI_GBS_80856 locus 28.10 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_GBS_80856 locus 131.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_GBS_80856 locus 111.30 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_GBS_80856 locus 34.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_GBS_80856 locus 36.07 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_GBS_80856 locus 111.30 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_GBS_80856 locus 63.20 () Automated name-based View Maps
GMI_ES22_c5531_401 locus 28.10 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES22_c5531_401 locus 36.07 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c5531_401 locus 111.30 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES22_c5531_401 locus 34.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES22_c5531_401 locus 131.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c5531_401 locus 111.30 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-3 GMI_ES22_c5531_401 locus 134.63 (cM) Automated name-based View Maps
GMI_ES05_c8916_635 locus 28.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES05_c8916_635 locus 63.20 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES05_c8916_635 locus 96.51 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES05_c8916_635 locus 111.30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES05_c8916_635 locus 131.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES05_c8916_635 locus 111.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES05_c8916_635 locus 36.07 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES05_c8916_635 locus 34.40 () Automated name-based View Maps
GMI_ES14_c12956_103 locus 48.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c12956_103 locus 69.30 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES14_c12956_103 locus 62.70 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c12956_103 locus 69.30 () Automated name-based View Maps
GMI_ES02_c19630_126 locus 52.10 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES02_c19630_126 locus 33.41 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES02_c19630_126 locus 59.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES02_c19630_126 locus 8.55 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES02_c19630_126 locus 60.80 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES02_c19630_126 locus 59.40 () Automated name-based View Maps
GMI_ES15_c9973_548 locus 52.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c9973_548 locus 6.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9973_548 locus 56.90 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9973_548 locus 7.60 (cM) Automated name-based View Maps
GMI_ES07_c2953_690 locus 52.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES07_c2953_690 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES07_c2953_690 locus 56.90 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES07_c2953_690 locus 52.27 (cM) Automated name-based View Maps
GMI_ES15_c6114_189 locus 53.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c6114_189 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c6114_189 locus 56.50 () Automated name-based View Maps
GMI_ES17_c5367_259 locus 53.30 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c5367 locus 56.23 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c5367_259 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c5367_259 locus 40.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c5367_259 locus 56.50 () Automated name-based View Maps
GMI_ES17_c9625_419 locus 53.30 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES17_c9625_419 locus 68.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c9625_419 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c9625_419 locus 56.50 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-9 GMI_ES17_c9625_419 locus 39.11 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES17_c9625_419 locus 40.20 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c9625 locus 56.52 () Automated name-based View Maps
GMI_ES15_c713_848 locus 53.30 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES15_c713 locus 56.17 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c713_848 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES15_c713_848 locus 2.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c713_848 locus 56.50 () Automated name-based View Maps
GMI_ES22_c4367_376 locus 53.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c4367_376 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES22_c4367_376 locus 2.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c4367_376 locus 56.50 () Automated name-based View Maps
GMI_ES22_c8670_78 locus 53.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c8670_78 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES22_c8670_78 locus 2.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c8670_78 locus 56.50 () Automated name-based View Maps
GMI_ES15_c6130_326 locus 53.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c6130_326 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c6130_326 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_2a GMI_ES15_c6130_326 locus 2.20 () Automated name-based View Maps
GMI_GBS_27180 locus 53.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_GBS_27180 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_GBS_27180 locus 56.50 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.