*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-IL5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-IL5_SS4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-IL5 [ View Map Set Info ]
Map Name: Oat-2016-IL5_SS4
Map Start: 0.00
Map Stop: 46.30
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c11620_201 locus 0.00 Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES01_c11620_201 locus 16.00 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES01_c11620_201 locus 14.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c11620_201 locus 0.40 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES01_c11620_201 locus 2.50 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES01_c11620_201 locus 23.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c11620_201 locus 0.40 () Automated name-based View Maps
GMI_ES15_c3333_509 locus 3.10 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_ES15_c3333_509 locus 12.19 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES15_c3333_509 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_ES15_c3333_509 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES15_c3333_509 locus 14.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES15_c3333_509 locus 3.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES15_c3333_509 locus 3.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES15_c3333_509 locus 88.06 (cM) Automated name-based View Maps
GMI_ES14_c53_424 locus 4.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c53_424 locus 4.50 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_ES14_c53_424 locus 9.56 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_ES14_c53_424 locus 2.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c53_424 locus 4.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES14_c53_424 locus 4.40 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES14_c53_424 locus 14.80 () Automated name-based View Maps
GMI_ES02_c14254_241 locus 21.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES02_c14254_241 locus 19.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES02_c14254_241 locus 13.80 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES02_c14254_241 locus 15.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES02_c14254_241 locus 19.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES02_c14254_241 locus 9.80 () Automated name-based View Maps
GMI_ES16_c312_896 locus 24.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES16_c312_896 locus 21.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES16_c312_896 locus 21.50 () Automated name-based View Maps
GMI_GBS_29651 locus 27.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_29651 locus 2.00 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_GBS_29651 locus 24.06 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_29651 locus 78.90 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_GBS_29651 locus 9.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_29651 locus 23.20 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_GBS_29651 locus 18.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_29651 locus 23.20 () Automated name-based View Maps
GMI_GBS_85630 locus 27.10 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_85630 locus 79.21 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_GBS_85630 locus 29.74 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_85630 locus 23.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_85630 locus 23.20 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_85630 locus 2.00 () Automated name-based View Maps
GMI_GBS_22030 locus 29.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_22030 locus 27.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_22030 locus 27.40 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_GBS_22030 locus 25.28 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_GBS_22030 locus 13.00 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_22030 locus 3.00 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_GBS_22030 locus 73.55 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_22030 locus 75.31 (cM) Automated name-based View Maps
GMI_ES02_c33619_381 locus 34.50 Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES02_c33619 locus 64.19 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES02_c33619_381 locus 29.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES02_c33619_381 locus 73.74 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES02_c33619_381 locus 14.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES02_c33619_381 locus 29.20 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES02_c33619_381 locus 3.50 () Automated name-based View Maps
GMI_ES01_c15198_534 locus 36.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES01_c15198_534 locus 73.74 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES01_c15198_534 locus 2.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES01_c15198_534 locus 14.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c15198_534 locus 30.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES01_c15198_534 locus 78.66 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c15198_534 locus 30.10 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES01_c15198_534 locus 3.50 () Automated name-based View Maps
GMI_ES01_c22124_205 locus 36.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c22124_205 locus 30.10 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES01_c22124_205 locus 2.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES01_c22124_205 locus 73.74 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES01_c22124 locus 62.26 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES01_c22124_205 locus 14.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c22124_205 locus 30.10 () Automated name-based View Maps
GMI_ES14_c12141_94 locus 38.40 Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES14_c12141_94 locus 2.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES14_c12141_94 locus 19.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c12141_94 locus 33.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c12141_94 locus 33.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES14_c12141_94 locus 69.37 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES14_c12141_94 locus 6.90 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_ES14_c12141_94 locus 33.80 () Automated name-based View Maps
GMI_ES22_c11766_112 locus 42.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c11766_112 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES22_c11766_112 locus 9.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c11766_112 locus 85.20 () Automated name-based View Maps
GMI_ES22_c11505_68 locus 42.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c11505_68 locus 85.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c11505_68 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES22_c11505_68 locus 38.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES22_c11505_68 locus 9.90 () Automated name-based View Maps
GMI_ES03_c12215_553 locus 42.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c12215_553 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c12215_553 locus 85.20 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES03_c12215_553 locus 13.65 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES03_c12215_553 locus 9.90 () Automated name-based View Maps
GMI_ES03_c1859_153 locus 42.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c1859_153 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c1859_153 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES03_c1859_153 locus 38.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c1859_153 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES03_c1859_153 locus 9.90 () Automated name-based View Maps
GMI_ES01_c12498_635 locus 42.20 Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES01_c12498_635 locus 38.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c12498_635 locus 85.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c12498_635 locus 85.20 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES01_c12498_635 locus 29.37 (cM) Automated name-based View Maps
GMI_ES03_c3828_733 locus 42.20 Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c3828_733 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES03_c3828_733 locus 9.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c3828_733 locus 85.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c3828_733 locus 85.20 () Automated name-based View Maps
GMI_DS_LB_4563 locus 46.30 Oat - Oat-2016-PxG - Oat-2016-PxG_31 GMI_DS_LB_4563 locus 6.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_4563 locus 91.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_4563 locus 91.60 () Automated name-based View Maps
GMI_ES03_c9523_612 locus 46.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c9523_612 locus 91.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c9523_612 locus 91.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_31 GMI_ES03_c9523_612 locus 6.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.