*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-KxO
(Reference Set)
Oat-Oat-2018-Consensus
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-KxO_13 Oat-2018-Consensus_Mrg06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-KxO [ View Map Set Info ]
Map Name: Oat-2016-KxO_13
Map Start: 0.00
Map Stop: 88.60
Features by Type:
58 locus
58 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 58.       of 3 | Next
Oat - Oat-2016-KxO - Oat-2016-KxO_13
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES14_c6436_578 locus 88.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES14_c6436_578 locus 14.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES14_c6436_578 locus 14.40 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_3 GMI_ES14_c6436_578 locus 0.00 () Automated name-based View Maps
GMI_ES14_c3401_306 locus 88.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_7b GMI_ES14_c3401_306 locus 38.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES14_c3401_306 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg11 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_15a GMI_ES14_c3401_306 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES14_c3401_306 locus 3.70 () Automated name-based View Maps
GMI_ES05_c12462_118 locus 88.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES05_c12462_118 locus 14.40 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_24 GMI_ES05_c12462_118 locus 0.80 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_16 GMI_ES05_c12462_118 locus 1.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES05_c12462_118 locus 14.40 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-15 GMI_ES05_c12462_118 locus 1.51 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_3 GMI_ES05_c12462_118 locus 0.00 () Automated name-based View Maps
avgbs_111922 locus 84.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_111922 locus 18.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_111922 locus 18.80 () Automated name-based View Maps
GMI_ES17_c7804_137 locus 84.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES17_c7804_137 locus 18.80 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_16 GMI_ES17_c7804_137 locus 1.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES17_c7804_137 locus 18.80 () Automated name-based View Maps
avgbs_111923 locus 84.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_111923 locus 18.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_111923 locus 18.80 () Automated name-based View Maps
avgbs_202260 locus 84.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_202260 locus 18.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_202260 locus 18.80 () Automated name-based View Maps
avgbs_18523 locus 84.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_18523 locus 18.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_18523 locus 18.80 () Automated name-based View Maps
GMI_GBS_81644 locus 84.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_GBS_81644 locus 18.80 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_GBS_81644 locus 84.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_GBS_81644 locus 84.14 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_GBS_81644 locus 18.80 () Automated name-based View Maps
avgbs_206347 locus 77.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_206347 locus 22.50 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12b avgbs_206347 locus 19.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_206347 locus 22.50 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_206347 locus 1.70 () Automated name-based View Maps
GMI_ES03_c8080_263 locus 77.90 Oat - Oat-2016-OxT - Oat-2016-OxT_12b GMI_ES03_c8080_263 locus 19.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MedxMN_1 GMI_ES03_c8080_263 locus 19.26 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 GMI_ES03_c8080_263 locus 1.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_ES03_c8080_263 locus 80.32 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_ES03_c8080_263 locus 81.20 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_ES03_c8080_263 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES03_c8080_263 locus 20.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES03_c8080_263 locus 20.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MakxMN_1 GMI_ES03_c8080_263 locus 11.41 (cM) Automated name-based View Maps
GMI_ES05_c25542_280 locus 72.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES05_c25542_280 locus 25.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES05_c25542_280 locus 25.20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_19 GMI_ES05_c25542_280 locus 38.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_ES05_c25542_280 locus 1.40 () Automated name-based View Maps
GMI_ES14_c9643_327 locus 72.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES14_c9643_327 locus 25.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES14_c9643_327 locus 25.20 () Automated name-based View Maps
avgbs_201338 locus 72.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_201338 locus 25.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_201338 locus 25.20 () Automated name-based View Maps
GMI_GBS_76060 locus 72.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_GBS_76060 locus 25.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_GBS_76060 locus 25.20 () Automated name-based View Maps
avgbs_29939 locus 68.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_29939 locus 28.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_29939 locus 28.40 () Automated name-based View Maps
GMI_ES14_c8930_208 locus 61.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES14_c8930_208 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_ES14_c8930_208 locus 61.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_ES14_c8930_208 locus 61.71 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES14_c8930_208 locus 35.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MedxMN_1 GMI_ES14_c8930_208 locus 3.06 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_19 GMI_ES14_c8930_208 locus 23.70 () Automated name-based View Maps
avgbs_204853 locus 61.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_204853 locus 38.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_204853 locus 11.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_204853 locus 38.00 () Automated name-based View Maps
avgbs_78800 locus 61.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_78800 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_78800 locus 35.40 () Automated name-based View Maps
GMI_DS_LB_2054 locus 61.10 Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_DS_LB_2054 locus 61.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_DS_LB_2054 locus 61.71 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_DS_LB_2054 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_19 GMI_DS_LB_2054 locus 23.70 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_DS_LB_2054 locus 7.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_DS_LB_2054 locus 35.40 () Automated name-based View Maps
GMI_ES02_lrc37108_772 locus 61.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES02_lrc37108_772 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_ES02_lrc37108_772 locus 7.70 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES02_lrc37108 locus 105.81 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_19 GMI_ES02_lrc37108_772 locus 23.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES02_lrc37108_772 locus 35.40 () Automated name-based View Maps
GMI_DS_LB_6480 locus 61.10 Oat - Oat-2016-PxB - Oat-2016-PxB_19 GMI_DS_LB_6480 locus 23.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MakxMN_1 GMI_DS_LB_6480 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_DS_LB_6480 locus 35.40 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_DS_LB_6480 locus 62.03 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 GMI_DS_LB_6480 locus 10.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MedxMN_1 GMI_DS_LB_6480 locus 3.71 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_DS_LB_6480 locus 35.40 () Automated name-based View Maps
GMI_ES01_c17690_632 locus 61.10 Oat - Oat-2016-OxP - Oat-2016-OxP_3 GMI_ES01_c17690_632 locus 12.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES01_c17690_632 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12b GMI_ES01_c17690_632 locus 36.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES01_c17690_632 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_24 GMI_ES01_c17690_632 locus 28.10 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-15 GMI_ES01_c17690_632 locus 23.92 (cM) Automated name-based View Maps
UMN5353A locus 58.70 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 umn5353a locus 43.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN5353A locus 39.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN5353A locus 39.60 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 UMN5353A locus 44.00 (cM) Automated name-based View Maps
CDO1509A locus 49.30 Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO1509A locus 37.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1509A locus 44.40 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo1509a locus 36.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1509A locus 44.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.