*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-KxO_39
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-KxO [ View Map Set Info ]
Map Name: Oat-2016-KxO_39
Map Start: 0
Map Stop: 16.4
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Oat-2016-KxO - Oat-2016-KxO_39
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMN5596_1 locus 16.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN5596_1 locus 183.4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 umn5596_1 locus 9 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN5596_1 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN5596_1 locus 183.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn5596_1 locus 8.9 () Automated name-based View Maps
avgbs_121761 locus 9.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_121761 locus 199.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_121761 locus 199.7 () Automated name-based View Maps
avgbs_121759 locus 9.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_121759 locus 199.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_121759 locus 199.7 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_2 avgbs_121759 locus 9.4 () Automated name-based View Maps
CDO482A locus 9.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO482A locus 200.4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 cdo482a locus 5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO482A locus 200.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO482A locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo482a locus 5.12 () Automated name-based View Maps
avgbs_121760 locus 9.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_121760 locus 199.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_121760 locus 199.7 () Automated name-based View Maps
avgbs_77894 locus 6.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_77894 locus 205.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_77894 locus 205.3 () Automated name-based View Maps
avgbs_113804 locus 6.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_113804 locus 202.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_113804 locus 202.6 () Automated name-based View Maps
avgbs_207120 locus 6.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_207120 locus 202.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_207120 locus 202.6 () Automated name-based View Maps
avgbs_77893 locus 6.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_77893 locus 205.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_2 avgbs_77893 locus 13 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_77893 locus 205.3 () Automated name-based View Maps
avgbs_207889 locus 6.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_207889 locus 201.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_207889 locus 201.4 () Automated name-based View Maps
ISU1372B locus 0 Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 ISU1372B locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 isu1372b locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU1372B locus 216.5 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 isu1372b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO16_23 isu1372b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU1372B locus 216.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.