*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-KxO_3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-KxO [ View Map Set Info ]
Map Name: Oat-2016-KxO_3
Map Start: 0.00
Map Stop: 217.80
Features by Type:
118 locus
118 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 118.       of 5 | Next
Oat - Oat-2016-KxO - Oat-2016-KxO_3
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMN5245_3 locus 217.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN5245_3 locus 209.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN5245_3 locus 209.90 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 UMN5245_3 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 umn5245_3 locus 0.00 () Automated name-based View Maps
ISU1874A locus 205.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU1874A locus 202.20 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 isu1874a locus 6.17 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 ISU1874A locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU1874A locus 202.20 () Automated name-based View Maps
ISU1463 locus 199.70 Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 ISU1463 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU1463 locus 196.40 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 ISU1463 locus 8.13 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G ISU1463 locus 51.90 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xisu1463 locus 2.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU1463 locus 196.40 () Automated name-based View Maps
UMN41 locus 191.30 Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 UMN41 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xumn41 locus 10.10 () Automated name-based View Maps
Oat - Oat-2004-P39xP48 - Oat-2004-P39xP48_4 umn41 locus 14.00 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 umn41 locus 10.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN41 locus 185.10 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-31 umn41 locus 149.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN41 locus 185.10 () Automated name-based View Maps
AB02.410 locus 189.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 AB02.410 locus 183.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 AB02.410 locus 183.50 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 ab02.410 locus 9.97 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 AB02.410 locus 0.00 (cM) Automated name-based View Maps
avgbs_21101 locus 187.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_21101 locus 181.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_21101 locus 181.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a avgbs_21101 locus 2.00 () Automated name-based View Maps
GMI_ES05_c8704_1184 locus 187.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c8704_1184 locus 181.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_ES05_c8704_1184 locus 2.00 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a GMI_ES05_c8704_1184 locus 3.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c8704_1184 locus 181.10 () Automated name-based View Maps
avgbs_11716 locus 187.10 Oat - Oat-2016-OxT - Oat-2016-OxT_1a avgbs_11716 locus 2.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_11716 locus 181.10 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a avgbs_11716 locus 3.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_11716 locus 181.10 () Automated name-based View Maps
avgbs_11717 locus 187.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a avgbs_11717 locus 3.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_11717 locus 181.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_11717 locus 181.10 () Automated name-based View Maps
avgbs_121961 locus 187.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_121961 locus 181.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_121961 locus 181.10 () Automated name-based View Maps
GMI_ES01_c6696_348 locus 187.10 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c6696 locus 35.85 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c6696_348 locus 181.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c6696_348 locus 181.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_ES01_c6696_348 locus 2.00 () Automated name-based View Maps
avgbs_110206 locus 187.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_110206 locus 181.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_110206 locus 181.10 () Automated name-based View Maps
avgbs_104428 locus 185.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_104428 locus 178.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_104428 locus 178.30 () Automated name-based View Maps
GMI_ES_CC2716_392 locus 185.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES_CC2716_392 locus 178.30 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_22 GMI_ES_CC2716_392 locus 72.30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_ES_CC2716_392 locus 2.00 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC2716 locus 36.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES_CC2716_392 locus 178.30 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a GMI_ES_CC2716_392 locus 3.00 () Automated name-based View Maps
GMI_ES_CC18060_346 locus 185.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES_CC18060_346 locus 180.00 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES_CC18060 locus 35.82 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_2 GMI_ES_CC18060_346 locus 6.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_ES_CC18060_346 locus 2.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES_CC18060_346 locus 180.00 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES_CC18060_346 locus 57.08 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP13a GMI_ES_CC18060_346 locus 3.00 () Automated name-based View Maps
avgbs_206230 locus 185.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_206230 locus 178.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_206230 locus 178.30 () Automated name-based View Maps
avgbs_203781 locus 185.00 Oat - Oat-2016-OxT - Oat-2016-OxT_1a avgbs_203781 locus 5.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_203781 locus 176.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_203781 locus 176.20 () Automated name-based View Maps
GMI_GBS_31651 locus 185.00 Oat - Oat-2016-OxT - Oat-2016-OxT_1a GMI_GBS_31651 locus 3.90 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_GBS_31651 locus 59.50 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_GBS_31651 locus 1.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_31651 locus 177.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_31651 locus 177.10 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_GBS_31651 locus 54.80 () Automated name-based View Maps
avgbs_10546 locus 185.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_10546 locus 176.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1a avgbs_10546 locus 5.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_10546 locus 176.20 () Automated name-based View Maps
avgbs_107667 locus 185.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_107667 locus 178.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_107667 locus 178.30 () Automated name-based View Maps
GMI_ES01_c21179_152 locus 182.80 Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_ES01_c21179_152 locus 2.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c21179_152 locus 172.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c21179_152 locus 172.00 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c21179_152 locus 46.12 (cM) Automated name-based View Maps
GMI_ES03_c5121_409 locus 182.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES03_c5121_409 locus 172.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_ES03_c5121_409 locus 2.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES03_c5121_409 locus 172.00 () Automated name-based View Maps
avgbs_7563 locus 182.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_7563 locus 172.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 avgbs_7563 locus 172.00 () Automated name-based View Maps
GMI_ES05_c3309_245 locus 182.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c3309_245 locus 172.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c3309_245 locus 172.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_41 GMI_ES05_c3309_245 locus 7.76 (cM) Automated name-based View Maps
GMI_ES01_c3388_616 locus 182.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c3388_616 locus 173.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c3388_616 locus 173.00 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c3388_616 locus 49.21 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_22 GMI_ES01_c3388_616 locus 6.70 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES01_c3388_616 locus 46.90 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.