*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-NSGC
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-NSGC_Mrg08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-NSGC [ View Map Set Info ]
Map Name: Oat-2016-NSGC_Mrg08
Map Start: 0 cM
Map Stop: 195.2 cM
Features by Type:
4 locus
2 qtl
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg08
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_ES15_c3872_341 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c3872_341 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c3872_341 locus 0 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg08 GMI_ES15_c3872_341 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES15_c3872_341 locus 114.5 () Automated name-based View Maps
GMI_GBS_1448 locus 82.4 Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_GBS_1448 locus 23.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_GBS_1448 locus 82.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_GBS_1448 locus 82.4 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_15 GMI_GBS_1448 locus 47.6 () Automated name-based View Maps
GMI_ES_CC10897_223 locus 131.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES_CC10897_223 locus 131.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES_CC10897_223 locus 131.3 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM16 GMI_ES_CC10897_223 locus 4.2 () Automated name-based View Maps
avgbs_206726 locus 195.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_206726 locus 195.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_206726 locus 195.2 () Automated name-based View Maps
Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg08 avgbs_206726 locus 195.2 () Automated name-based View Maps
QPc.NSGC-Mrg08.2 qtl 131.3 No other positions
QPcS.NSGC-Mrg08.1 qtl 82.4 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.