*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-OxP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-OxP_20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-OxP [ View Map Set Info ]
Map Name: Oat-2016-OxP_20
Map Start: 0
Map Stop: 109.3
Features by Type:
64 locus
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 64.       of 3 | Next
Oat - Oat-2016-OxP - Oat-2016-OxP_20
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES17_c2707_866 locus 0 Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES17_c2707_866 locus 27 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c2707_866 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c2707_866 locus 0 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c2707 locus 83.76 () Automated name-based View Maps
GMI_ES15_c4514_346 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES15_c4514_346 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES15_c4514_346 locus 0 () Automated name-based View Maps
GMI_ES_LB_11625 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_LB_11625 locus 0 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES_LB_11625 locus 6.05 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES_LB_11625 locus 89.31 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES_LB_11625 locus 11 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES_LB_11625 locus 25.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_LB_11625 locus 0 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_ES_LB_11625 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg02 GMI_ES_LB_11625 locus 0 (cM) Automated name-based View Maps
GMI_ES14_c11095_559 locus 0 Oat - Oat-2016-BxG - Oat-2016-BxG_33 GMI_ES14_c11095_559 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c11095_559 locus 0 () Automated name-based View Maps
Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg02 GMI_ES14_c11095_559 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg02 GMI_ES14_c11095_559 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c11095_559 locus 0 () Automated name-based View Maps
GMI_ES17_c12874_218 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c12874_218 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c12874_218 locus 0 () Automated name-based View Maps
GMI_ES02_c2412_830 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES02_c2412_830 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES02_c2412_830 locus 0 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES02_c2412_830 locus 6.65 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES02_c2412_830 locus 89.31 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES02_c2412_830 locus 11 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES02_c2412_830 locus 25.8 () Automated name-based View Maps
avgbs_220846 locus 0.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_220846 locus 0.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_220846 locus 0.6 () Automated name-based View Maps
GMI_ES03_c649_134 locus 2.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c649_134 locus 2.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c649_134 locus 41 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c649_134 locus 2.7 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES03_c649_134 locus 2.2 () Automated name-based View Maps
avgbs_57430 locus 5.2 Oat - Oat-2016-DxE - Oat-2016-DxE_7 avgbs_57430 locus 40.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_57430 locus 5.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_57430 locus 5.4 () Automated name-based View Maps
GMI_ES17_c19068_531 locus 7.6 Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c19068 locus 90.96 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c19068_531 locus 7.9 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES17_c19068_531 locus 88.37 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_ES17_c19068_531 locus 16.98 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c19068_531 locus 7.9 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES17_c19068_531 locus 35.9 () Automated name-based View Maps
GMI_ES_LB_7578 locus 13.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_LB_7578 locus 13.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_LB_7578 locus 13.2 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES_LB_7578 locus 0 () Automated name-based View Maps
GMI_ES03_c15766_534 locus 18.7 Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES03_c15766_534 locus 11.4 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_15a GMI_ES03_c15766_534 locus 20.8 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES03_c15766_534 locus 2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c15766_534 locus 16.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c15766_534 locus 16.2 () Automated name-based View Maps
GMI_GBS_29651 locus 18.7 Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_GBS_29651 locus 9.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_GBS_29651 locus 27.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_29651 locus 23.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_29651 locus 78.9 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_29651 locus 2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_29651 locus 23.2 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10 GMI_GBS_29651 locus 24.06 (cM) Automated name-based View Maps
GMI_GBS_16992 locus 22.8 Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_GBS_16992 locus 15.9 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_GBS_16992 locus 13 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_16992 locus 26 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_16992 locus 26 () Automated name-based View Maps
GMI_ES01_c14233_268 locus 27.4 Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES01_c14233_268 locus 2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c14233_268 locus 29 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES01_c14233 locus 62.96 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c14233_268 locus 29 () Automated name-based View Maps
GMI_ES01_c17110_96 locus 28.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c17110_96 locus 29.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c17110_96 locus 29.7 () Automated name-based View Maps
GMI_ES14_c12141_94 locus 33.8 Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES14_c12141_94 locus 2.1 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES14_c12141_94 locus 6.9 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES14_c12141_94 locus 19 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c12141_94 locus 33 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES14_c12141_94 locus 69.37 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_ES14_c12141_94 locus 38.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c12141_94 locus 33 () Automated name-based View Maps
GMI_ES03_c4395_765 locus 33.8 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c4395_765 locus 33 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_ES03_c4395_765 locus 19 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c4395_765 locus 33 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES03_c4395_765 locus 69.37 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES03_c4395_765 locus 6.9 () Automated name-based View Maps
avgbs_58433 locus 36 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_58433 locus 39.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_58433 locus 39.8 () Automated name-based View Maps
avgbs_95827 locus 36 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_95827 locus 39.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_95827 locus 39.8 () Automated name-based View Maps
avgbs_92402 locus 36 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_92402 locus 39.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_92402 locus 39.8 () Automated name-based View Maps
avgbs_50101 locus 38.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_50101 locus 42.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_50101 locus 42.4 () Automated name-based View Maps
avgbs_85036 locus 44.3 Oat - Oat-2016-PxG - Oat-2016-PxG_27a avgbs_85036 locus 28.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_85036 locus 48.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_85036 locus 48.6 () Automated name-based View Maps
avgbs_13425 locus 45.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_13425 locus 49.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_13425 locus 49.8 () Automated name-based View Maps
avgbs_90349 locus 48.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_90349 locus 52.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_90349 locus 52.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.