*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-OxT_12a
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-OxT [ View Map Set Info ]
Map Name: Oat-2016-OxT_12a
Map Start: 0
Map Stop: 9.9
Features by Type:
210 locus
210 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 210.       of 9 | Next
Oat - Oat-2016-OxT - Oat-2016-OxT_12a
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES22_c2813_554 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c2813_554 locus 87.3 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-27 GMI_ES22_c2813_554 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c2813_554 locus 87.3 () Automated name-based View Maps
GMI_ES22_c10123_85 locus 2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c10123_85 locus 72.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c10123_85 locus 72.7 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-27 GMI_ES22_c10123_85 locus 1.22 (cM) Automated name-based View Maps
BCD1280B locus 2 Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 bcd1280b locus 30 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 BCD1280B locus 30 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 bcd1280b locus 85.4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_12 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 BCD1280B locus 38.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 bcd1280b locus 6.77 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_26 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_16 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 BCD1280B locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 BCD1280B locus 85.2 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 BCD1280B locus 65.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 bcd1280b locus 80 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 bcd1280b locus 41.76 (cM) Automated name-based View Maps
GMI_ES01_c6574_349 locus 2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES01_c6574_349 locus 131.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c6574 locus 85.67 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES01_c6574_349 locus 131.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_31 GMI_ES01_c6574_349 locus 2 () Automated name-based View Maps
GMI_c2391_1 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_c2391_1 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_c2391_1 locus 85.2 () Automated name-based View Maps
GMI_ES03_c14098_263 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c14098_263 locus 72.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c14098_263 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c14098_263 locus 72.7 () Automated name-based View Maps
GMI_ES01_c29247_156 locus 3.9 Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg02 GMI_ES01_c29247_156 locus 85.2 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c29247_156 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES01_c29247_156 locus 0 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES01_c29247_156 locus 38.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c29247_156 locus 85.2 () Automated name-based View Maps
GMI_ES22_c2732_580 locus 3.9 Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES22_c2732_580 locus 38.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c2732_580 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c2732_580 locus 85.2 () Automated name-based View Maps
GMI_ES22_c2352_65 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_ES22_c2352_65 locus 92.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES22_c2352_65 locus 92.5 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss18 GMI_ES22_c2352_65 locus 9.4 () Automated name-based View Maps
GMI_ES22_c18339_440 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c18339_440 locus 82.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c18339_440 locus 82.4 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-47 GMI_ES22_c18339_440 locus 0 (cM) Automated name-based View Maps
GMI_c841_2 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_c841_2 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_c841_2 locus 85.2 () Automated name-based View Maps
GMI_ES01_c13079_243 locus 3.9 Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg02 GMI_ES01_c13079_243 locus 85.2 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES01_c13079_243 locus 38.1 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES01_c13079_243 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c13079_243 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c13079_243 locus 85.2 () Automated name-based View Maps
GMI_ES03_c3011_446 locus 3.9 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-27 GMI_ES03_c3011_446 locus 2.09 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c3011_446 locus 0 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_15 GMI_ES03_c3011_446 locus 1.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c3011_446 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c3011_446 locus 87.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_19 GMI_ES03_c3011_446 locus 1.27 (cM) Automated name-based View Maps
GMI_c841_3 locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_c841_3 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_c841_3 locus 85.2 () Automated name-based View Maps
avgbs_29844 locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_29844 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_29844 locus 85.2 () Automated name-based View Maps
GMI_ES01_c12179_323 locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c12179_323 locus 72.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c12179_323 locus 72.7 () Automated name-based View Maps
GMI_DS_LB_10093 locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_10093 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_10093 locus 87.3 () Automated name-based View Maps
GMI_ES02_c11775_206 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES02_c11775_206 locus 44.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES02_c11775_206 locus 44.3 () Automated name-based View Maps
PSR547 locus 3.9 Barley - Barley, CxH - Hordeum-CxH-7H psr547 locus 165.34 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H psr547 locus 78.71 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 PSR547 locus 85.2 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H psr547 locus 126.5 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 psr547 locus 84.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 PSR547 locus 85.2 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 PSR547 locus 64.5 (cM) Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-7 Xpsr547-7S locus 119.4 () Automated name-based View Maps
Barley - Barley, GxHN, SFNB - Hordeum-GxHN-SFNB-7H psr547 locus 125.7 () Automated name-based View Maps
GMI_ES01_c20737_408 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c20737_408 locus 85.2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES01_c20737 locus 21.45 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES01_c20737_408 locus 38.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c20737_408 locus 85.2 () Automated name-based View Maps
RZ682A locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 RZ682A locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 RZ682A locus 85.2 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 rz682a locus 77.5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 rz682a locus 82.8 () Automated name-based View Maps
ISU2192A locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ISU2192A locus 85.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 isu2192a locus 80.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 ISU2192A locus 110.4 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 isu2192a locus 88.82 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 ISU2192A locus 110.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_7_10_28 ISU2192A locus 71 (cM) Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO7_10_28 isu2192a locus 36.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 ISU2192A locus 65 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ISU2192A locus 85.2 () Automated name-based View Maps
GMI_ES01_c2095_229 locus 3.9 Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg02 GMI_ES01_c2095_229 locus 85.2 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES01_c2095_229 locus 38.1 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES01_c2095_229 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c2095_229 locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c2095_229 locus 85.2 () Automated name-based View Maps
GMI_ES17_c7623_611 locus 3.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c7623_611 locus 72.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES17_c7623_611 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c7623_611 locus 72.7 () Automated name-based View Maps
GMI_ES22_lrc9822_459 locus 3.9 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_lrc9822_459 locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_lrc9822_459 locus 85.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.