*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-OxT_12b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-OxT [ View Map Set Info ]
Map Name: Oat-2016-OxT_12b
Map Start: 0.00
Map Stop: 69.10
Features by Type:
53 locus
53 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 53.       of 3 | Next
Oat - Oat-2016-OxT - Oat-2016-OxT_12b
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_81828 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_81828 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_81828 locus 0.00 () Automated name-based View Maps
avgbs_60655 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_60655 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_60655 locus 0.00 () Automated name-based View Maps
ISU2287A locus 3.10 Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 isu2287a locus 4.14 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 ISU2287A locus 8.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 ISU2287A locus 2.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 ISU2287A locus 135.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 ISU2287A locus 135.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 ISU2287A locus 2.20 () Automated name-based View Maps
avgbs_37697 locus 19.00 Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_37697 locus 1.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_37697 locus 25.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_37697 locus 25.20 () Automated name-based View Maps
avgbs_83652 locus 19.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_83652 locus 20.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_83652 locus 20.70 () Automated name-based View Maps
avgbs_206347 locus 19.00 Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_206347 locus 1.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_206347 locus 22.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_206347 locus 22.50 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 avgbs_206347 locus 77.90 () Automated name-based View Maps
avgbs_105922 locus 19.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_105922 locus 20.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_105922 locus 20.70 () Automated name-based View Maps
avgbs_201773 locus 19.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_201773 locus 20.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_201773 locus 20.70 () Automated name-based View Maps
avgbs_120510 locus 19.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_120510 locus 20.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_120510 locus 20.70 () Automated name-based View Maps
GMI_ES03_c8080_263 locus 19.00 Oat - Oat-2014-CrownRust - Oat-2014-MedxMN_1 GMI_ES03_c8080_263 locus 19.26 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 GMI_ES03_c8080_263 locus 77.90 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 GMI_ES03_c8080_263 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_ES03_c8080_263 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_ES03_c8080_263 locus 81.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_ES03_c8080_263 locus 80.32 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES03_c8080_263 locus 20.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES03_c8080_263 locus 20.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MakxMN_1 GMI_ES03_c8080_263 locus 11.41 (cM) Automated name-based View Maps
avgbs_85403 locus 19.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_85403 locus 25.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_85403 locus 25.20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_85403 locus 1.70 () Automated name-based View Maps
avgbs_112293 locus 21.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_112293 locus 26.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_112293 locus 26.20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_8 avgbs_112293 locus 2.70 () Automated name-based View Maps
GMI_ES17_c4266_283 locus 27.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES17_c4266_283 locus 29.10 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES17_c4266 locus 118.43 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES17_c4266_283 locus 29.10 () Automated name-based View Maps
GMI_GBS_13308 locus 27.40 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_GBS_13308 locus 73.51 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_GBS_13308 locus 29.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_GBS_13308 locus 29.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_GBS_13308 locus 74.20 () Automated name-based View Maps
avgbs_55444 locus 27.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_55444 locus 29.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_55444 locus 29.10 () Automated name-based View Maps
GMI_GBS_61527 locus 27.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_GBS_61527 locus 29.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-42 GMI_GBS_61527 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_GBS_61527 locus 29.10 () Automated name-based View Maps
GMI_GBS_90753 locus 27.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_GBS_90753 locus 29.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_14 GMI_GBS_90753 locus 74.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_GBS_90753 locus 73.51 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_GBS_90753 locus 29.10 () Automated name-based View Maps
avgbs_201270 locus 27.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_201270 locus 29.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_201270 locus 29.10 () Automated name-based View Maps
avgbs_219615 locus 28.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_219615 locus 29.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_219615 locus 29.70 () Automated name-based View Maps
GMI_ES14_c1439_83 locus 28.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES14_c1439_83 locus 29.70 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-42 GMI_ES14_c1439_83 locus 1.26 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19b GMI_ES14_c1439_83 locus 4.10 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-15 GMI_ES14_c1439_83 locus 17.64 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES14_c1439_83 locus 29.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MedxMN_1 GMI_ES14_c1439_83 locus 11.74 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-MakxMN_1 GMI_ES14_c1439_83 locus 6.46 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_ES14_c1439_83 locus 73.19 (cM) Automated name-based View Maps
avgbs_116913 locus 28.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_116913 locus 29.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_116913 locus 29.70 () Automated name-based View Maps
avgbs_217640 locus 36.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_217640 locus 33.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_217640 locus 33.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_3 avgbs_217640 locus 9.00 () Automated name-based View Maps
GMI_ES01_c17690_632 locus 36.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES01_c17690_632 locus 35.40 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_24 GMI_ES01_c17690_632 locus 28.10 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 GMI_ES01_c17690_632 locus 61.10 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-15 GMI_ES01_c17690_632 locus 23.92 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_3 GMI_ES01_c17690_632 locus 12.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_ES01_c17690_632 locus 35.40 () Automated name-based View Maps
avgbs_97068 locus 36.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_97068 locus 35.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_97068 locus 35.40 () Automated name-based View Maps
avgbs_106013 locus 36.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_106013 locus 35.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_106013 locus 35.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.