*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_14
Map Start: 0.00
Map Stop: 114.40
Features by Type:
99 locus
99 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 99.       of 4 | Next
Oat - Oat-2016-PxG - Oat-2016-PxG_14
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c12586_336 locus 0.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_8 GMI_ES01_c12586_336 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14a GMI_ES01_c12586_336 locus 92.80 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_3 GMI_ES01_c12586_336 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES01_c12586_336 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES01_c12586_336 locus 0.00 () Automated name-based View Maps
GMI_ES_LB_11914 locus 0.00 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS12 GMI_ES_LB_11914 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES_LB_11914 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES_LB_11914 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_1a GMI_ES_LB_11914 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_4 GMI_ES_LB_11914 locus 0.00 () Automated name-based View Maps
GMI_DS_CC5720_167 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_DS_CC5720_167 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_4 GMI_DS_CC5720_167 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_DS_CC5720_167 locus 0.00 () Automated name-based View Maps
GMI_ES17_c9765_99 locus 0.00 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS12 GMI_ES17_c9765_99 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES17_c9765_99 locus 0.50 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_1a GMI_ES17_c9765_99 locus 0.90 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_4 GMI_ES17_c9765_99 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES17_c9765_99 locus 0.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_13 GMI_ES17_c9765_99 locus 4.00 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-25 GMI_ES17_c9765_99 locus 22.19 (cM) Automated name-based View Maps
avgbs_213132 locus 1.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_213132 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_213132 locus 1.10 () Automated name-based View Maps
avgbs_111055 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_111055 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_111055 locus 1.10 () Automated name-based View Maps
avgbs_54151 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_54151 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_54151 locus 1.10 () Automated name-based View Maps
avgbs_229465 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_229465 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_229465 locus 1.10 () Automated name-based View Maps
avgbs_38205 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_38205 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_38205 locus 1.10 () Automated name-based View Maps
avgbs_90102 locus 1.10 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss22 avgbs_90102 locus 7.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_90102 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_90102 locus 1.10 () Automated name-based View Maps
avgbs_51409 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_51409 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_51409 locus 1.10 () Automated name-based View Maps
avgbs_80785 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_80785 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_80785 locus 1.10 () Automated name-based View Maps
avgbs_101344 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_101344 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_101344 locus 1.10 () Automated name-based View Maps
avgbs_10368 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_10368 locus 1.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_10368 locus 1.10 () Automated name-based View Maps
avgbs_36246 locus 4.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_36246 locus 2.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_36246 locus 2.50 () Automated name-based View Maps
avgbs_121935 locus 4.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_121935 locus 2.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_121935 locus 2.50 () Automated name-based View Maps
avgbs_67999 locus 7.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_67999 locus 4.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_67999 locus 4.60 () Automated name-based View Maps
avgbs_213612 locus 9.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_213612 locus 6.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_213612 locus 6.30 () Automated name-based View Maps
GMI_ES17_c19709_452 locus 11.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES17_c19709_452 locus 8.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES17_c19709_452 locus 8.00 () Automated name-based View Maps
avgbs_119667 locus 11.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_119667 locus 8.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_119667 locus 8.00 () Automated name-based View Maps
avgbs_214012 locus 14.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_214012 locus 11.10 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss22 avgbs_214012 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_214012 locus 11.10 () Automated name-based View Maps
GMI_ES17_c2767_643 locus 16.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES17_c2767_643 locus 12.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES17_c2767_643 locus 12.80 () Automated name-based View Maps
avgbs_16811 locus 16.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_16811 locus 12.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_16811 locus 12.80 () Automated name-based View Maps
avgbs_102066 locus 17.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_102066 locus 14.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_102066 locus 14.30 () Automated name-based View Maps
GMI_GBS_71500 locus 19.00 Oat - Oat-2016-PxB - Oat-2016-PxB_4 GMI_GBS_71500 locus 8.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS12 GMI_GBS_71500 locus 15.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_GBS_71500 locus 15.10 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_8 GMI_GBS_71500 locus 13.30 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_GBS_71500 locus 15.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_3 GMI_GBS_71500 locus 14.10 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.