*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_18
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_18
Map Start: 0.00
Map Stop: 221.40
Features by Type:
123 locus
123 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 123.       of 5 | Next
Oat - Oat-2016-PxG - Oat-2016-PxG_18
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c4452_325 locus 0.00 Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES01_c4452 locus 14.41 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c4452_325 locus 13.00 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_ES01_c4452_325 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_17 GMI_ES01_c4452_325 locus 8.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c4452_325 locus 13.00 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_15 GMI_ES01_c4452_325 locus 10.60 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES01_c4452_325 locus 104.80 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_12 GMI_ES01_c4452_325 locus 0.00 (cM) Automated name-based View Maps
avgbs_119356 locus 7.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_119356 locus 20.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_119356 locus 20.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_17 avgbs_119356 locus 3.10 () Automated name-based View Maps
avgbs_28123 locus 8.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_28123 locus 21.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_28123 locus 21.60 () Automated name-based View Maps
GMI_DS_oPt-17694_374 locus 20.30 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_DS_oPt-17694_374 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_oPt-17694_374 locus 31.20 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_15 GMI_DS_oPt-17694_374 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_DS_oPt-17694_374 locus 105.60 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_DS_oPt-17694 locus 25.67 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_oPt-17694_374 locus 31.20 () Automated name-based View Maps
GMI_DS_LB_6395 locus 22.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_LB_6395 locus 31.90 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_DS_LB_6395 locus 105.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_LB_6395 locus 31.90 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_15 GMI_DS_LB_6395 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_DS_LB_6395 locus 0.00 () Automated name-based View Maps
GMI_ES01_c5395_117 locus 32.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c5395_117 locus 35.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c5395_117 locus 35.70 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES01_c5395_117 locus 56.00 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_ES01_c5395_117 locus 10.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SC19 GMI_ES01_c5395_117 locus 36.60 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-4 GMI_ES01_c5395 locus 25.92 () Automated name-based View Maps
GMI_ES17_c24_198 locus 43.20 Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_ES17_c24_198 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES17_c24_198 locus 87.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES17_c24_198 locus 19.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES17_c24_198 locus 44.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_ES17_c24_198 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_ES17_c24_198 locus 17.80 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-12 GMI_ES17_c24_198 locus 61.57 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES17_c24_198 locus 44.30 () Automated name-based View Maps
GMI_ES05_c10573_58 locus 43.20 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES05_c10573_58 locus 19.60 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_ES05_c10573_58 locus 17.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES05_c10573_58 locus 44.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES05_c10573_58 locus 44.30 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES05_c10573_58 locus 80.30 () Automated name-based View Maps
GMI_ES_CC7433_103 locus 46.40 Oat - Oat-2016-IL5 - Oat-2016-IL5_SC19 GMI_ES_CC7433_103 locus 22.80 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES_CC7433_103 locus 41.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES_CC7433_103 locus 46.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES_CC7433_103 locus 46.50 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES_CC7433 locus 43.87 () Automated name-based View Maps
GMI_DS_LB_9683 locus 50.80 Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_DS_LB_9683 locus 84.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_LB_9683 locus 51.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_DS_LB_9683 locus 29.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_DS_LB_9683 locus 2.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_DS_LB_9683 locus 2.26 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_LB_9683 locus 51.50 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_DS_LB_9683 locus 23.20 () Automated name-based View Maps
GMI_DS_LB_6423 locus 50.80 Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_DS_LB_6423 locus 29.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_13 GMI_DS_LB_6423 locus 2.26 (cM) Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_10 GMI_DS_LB_6423 locus 23.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_LB_6423 locus 51.50 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_DS_LB_6423 locus 84.60 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_6 GMI_DS_LB_6423 locus 2.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_DS_LB_6423 locus 51.50 () Automated name-based View Maps
GMI_ES_CC11621_230 locus 54.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES_CC11621_230 locus 53.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES_CC11621_230 locus 53.60 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES_CC11621 locus 47.48 () Automated name-based View Maps
GMI_ES05_c8628_73 locus 60.30 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES05_c8628_73 locus 71.90 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-26 GMI_ES05_c8628_73 locus 33.04 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES05_c8628_73 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES05_c8628_73 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14c GMI_ES05_c8628_73 locus 31.70 () Automated name-based View Maps
GMI_ES03_c273_826 locus 71.20 Oat - Oat-2016-IL4 - Oat-2016-IL4_8 GMI_ES03_c273_826 locus 30.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES03_c273_826 locus 59.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES03_c273_826 locus 59.20 () Automated name-based View Maps
GMI_ES02_c14559_362 locus 78.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES02_c14559_362 locus 62.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES02_c14559_362 locus 62.40 () Automated name-based View Maps
GMI_ES01_c602_138 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c602_138 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c602_138 locus 62.40 () Automated name-based View Maps
avgbs_231405 locus 78.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_231405 locus 62.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_231405 locus 62.40 () Automated name-based View Maps
avgbs_79197 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_79197 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_79197 locus 62.40 () Automated name-based View Maps
avgbs_3248 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_3248 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_3248 locus 62.40 () Automated name-based View Maps
avgbs_36416 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_36416 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_36416 locus 62.40 () Automated name-based View Maps
GMI_ES01_c10372_615 locus 78.70 Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_ES01_c10372 locus 39.96 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c10372_615 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES01_c10372_615 locus 62.40 () Automated name-based View Maps
avgbs_62920 locus 78.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_62920 locus 62.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_62920 locus 62.40 () Automated name-based View Maps
avgbs_65804 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_65804 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_65804 locus 62.40 () Automated name-based View Maps
avgbs_79192 locus 78.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_79192 locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_79192 locus 62.40 () Automated name-based View Maps
avgbs_229065 locus 78.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_229065 locus 62.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_229065 locus 62.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.