*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_24
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_24
Map Start: 0
Map Stop: 52.2
Features by Type:
12 locus
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Oat - Oat-2016-PxG - Oat-2016-PxG_24
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES01_c18122_404 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_19 GMI_ES01_c18122_404 locus 5.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-10 GMI_ES01_c18122 locus 26.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES01_c18122_404 locus 142.9 () Automated name-based View Maps
GMI_ES_CC17073_137 locus 11.6 Oat - Oat-2016-KxO - Oat-2016-KxO_32 GMI_ES_CC17073_137 locus 18.7 () Automated name-based View Maps
GMI_ES01_c8136_574 locus 16.2 Oat - Oat-2016-KxO - Oat-2016-KxO_32 GMI_ES01_c8136_574 locus 8.2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_4a GMI_ES01_c8136_574 locus 18.1 () Automated name-based View Maps
GMI_ES02_c2096_512 locus 36 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c2096_512 locus 117.4 () Automated name-based View Maps
avgbs_200489 locus 37.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_200489 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_19 avgbs_200489 locus 112.4 () Automated name-based View Maps
avgbs_8098 locus 42.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_8098 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_8098 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_8098 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_8098 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_8098 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_8098 locus 117.4 () Automated name-based View Maps
avgbs_215156 locus 44.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh21 avgbs_215156 locus 1 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_19 avgbs_215156 locus 110.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 avgbs_215156 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 avgbs_215156 locus 117.4 () Automated name-based View Maps
GMI_ES01_c15628_381 locus 44.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_17A-7C GMI_ES01_c15628 locus 2.29 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh21 GMI_ES01_c15628_381 locus 1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES01_c15628_381 locus 117.4 () Automated name-based View Maps
GMI_ES02_c3577_672 locus 46.8 Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_17A-7C GMI_ES02_c3577 locus 3.01 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh21 GMI_ES02_c3577_672 locus 1 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_19 GMI_ES02_c3577_672 locus 24.7 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-17 GMI_ES02_c3577_672 locus 46.26 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES02_c3577_672 locus 117.4 () Automated name-based View Maps
GMI_ES_LB_6670 locus 52.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES_LB_6670 locus 110.8 () Automated name-based View Maps
GMI_ES14_c2441_215 locus 52.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_9 GMI_ES14_c2441_215 locus 3.2 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_31 GMI_ES14_c2441_215 locus 3.24 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-20 GMI_ES14_c2441_215 locus 43 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh21 GMI_ES14_c2441_215 locus 5.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 GMI_ES14_c2441_215 locus 117.4 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-17 GMI_ES14_c2441_215 locus 51.17 (cM) Automated name-based View Maps
GMI_ES15_c13434_347 locus 52.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 GMI_ES15_c13434_347 locus 43.8 () Automated name-based View Maps
Oat - Oat-2013-SNP-HxZ - Oat-2013-SNP-HxZ-8 GMI_ES15_c13434 locus 38.28 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-14 GMI_ES15_c13434_347 locus 11.84 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_20 GMI_ES15_c13434_347 locus 38.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 GMI_ES15_c13434_347 locus 43.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.